View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_high_17 (Length: 264)
Name: NF18263_high_17
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 34500918 - 34500685
Alignment:
| Q |
1 |
ttaatttgtggtcaaaaaatggggaaccaattacatttttaatgttatattatttaatggtagtgtgtagggtgtaacattttatatatttgcacatgat |
100 |
Q |
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| T |
34500918 |
ttaatttgtggtcaaaaaatggggaaccaattacatttttaatgttatatttt---atgctagtgtgtagggtgtaacattttatatatttgcacatgat |
34500822 |
T |
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| Q |
101 |
aatttattagcagcttcttttaaaaacttaaaatttagacgccttctgatggc--tagctgtttgttttagattgtttcaaccacaaatatctaagtttt |
198 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34500821 |
aatttattagcagtttcttttaaaaacttaaaatttagacgccttctgatggctatagctgtttgttttagattgtttcaaccacaaatatctaaggttt |
34500722 |
T |
|
| Q |
199 |
atagtcctaagcaatttttgtttataaaaaataaaca |
235 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34500721 |
atagtcctaagcaatttttgtttataaaaaataaaca |
34500685 |
T |
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