View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_high_20 (Length: 246)
Name: NF18263_high_20
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 42860654 - 42860880
Alignment:
| Q |
16 |
aatatgtgcgtaagatatgtcatgatattctttttcgatctaacaataatagatattttacattttacctt-ccagctttgtgatcttaatgcaacggca |
114 |
Q |
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| T |
42860654 |
aatatgtgcgtaagatatgtcatgatattctttttcgatctaacaataatagatattttacattttacctttccagctttgtgatcttaatgcaacggca |
42860753 |
T |
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| Q |
115 |
tcaacagccaattactgaaatgcagaaagggaggattacagatctttcaaaacgcctggacgagggcctgttcaaagctgctctctctaaggttttttct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
42860754 |
tcaacagccaattactgaaatgcagaaagggaggattacagatctttcaaaacgcctggacgagggcctgttcaaagctgctctcacgaaggttttttct |
42860853 |
T |
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| Q |
215 |
ggatctcatttcaattttcttttcact |
241 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42860854 |
ggatctcatttcaattttcttttcact |
42860880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 42856577 - 42856803
Alignment:
| Q |
16 |
aatatgtgcgtaagatatgtcatgatattctttttcgatctaacaataatagatattttacattttacctt-ccagctttgtgatcttaatgcaacggca |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42856577 |
aataagtgcgtaagatatgtcatgatattctttttcgatctaacaataatagatattttacattttacctttccagctttgtgatcttaatgcaacggca |
42856676 |
T |
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| Q |
115 |
tcaacagccaattactgaaatgcagaaagggaggattacagatctttcaaaacgcctggacgagggcctgttcaaagctgctctctctaaggttttttct |
214 |
Q |
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| T |
42856677 |
tcaacagccaattactgaaatgcagaaagggaagattacagatctttcaaaacgcctggatgagggcctgttcaaagctgctctcacgaaggttttttct |
42856776 |
T |
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| Q |
215 |
ggatctcatttcaattttcttttcact |
241 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42856777 |
ggatctcatttcaattttcttttcact |
42856803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 42848438 - 42848620
Alignment:
| Q |
59 |
caataatagatattttacattttaccttccagctttgtgatcttaatgcaacggcatcaacagccaattactgaaatgcagaaagggaggattacagatc |
158 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| | ||||||||| |||| |
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| T |
42848438 |
caataataaatactttacattttaccttccagctttgtgatcttaatgcaactgcatcaacagccaactaatgaaatgcagagaaggaggattaaggatc |
42848537 |
T |
|
| Q |
159 |
tttcaaaacgcctggacgagggcctgttcaaagctgctctctctaaggttttttctggatctcatttcaattttcttttcact |
241 |
Q |
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||||||||||| |||| |||||| |||| |||||| ||||| ||| |||||||||| |||||||||| |||||||||||||| |
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| T |
42848538 |
tttcaaaacgcttggaggagggcatgttaaaagcttctctcactatggttttttcttgatctcattttcattttcttttcact |
42848620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 42854983 - 42855149
Alignment:
| Q |
59 |
caataatagatattttacattttaccttccagctttgtgatcttaatgcaacggcatcaacagccaattactgaaatgcagaaagggaggattacagatc |
158 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||| |
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| T |
42854983 |
caataatagatattttacattttaacttccagctttgtgatcttaatgcaacggcatcagcagccaattaatgaaatgcagaaaaggaggattaagaatc |
42855082 |
T |
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| Q |
159 |
tttcaaaacgcctggacgagggcctgttcaaagctgctctctctaaggttttttctggatctcattt |
225 |
Q |
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||||||||| | |||| |||||| |||| |||||| ||||| ||| ||||||||||||||||||||| |
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| T |
42855083 |
tttcaaaacacttggaggagggcatgttaaaagcttctctcactatggttttttctggatctcattt |
42855149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 42853108 - 42853274
Alignment:
| Q |
75 |
acattttaccttccagctttgtgatcttaatgcaacggcat-caacagccaattactgaaatgcagaaagggaggattacagatctttcaaaacgcctgg |
173 |
Q |
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|||||||||||||||||| || ||| ||| ||||||||||| ||| | ||| ||| ||||||||||||| ||||||| | |||||||||||| |||||| |
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| T |
42853108 |
acattttaccttccagctatgagatgttattgcaacggcatgcaata-ccagttagtgaaatgcagaaaaggaggatcaaggatctttcaaaatgcctgg |
42853206 |
T |
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| Q |
174 |
acgagggcctgttcaaagctgctctctctaaggttttttctggatctcatttcaattttcttttcact |
241 |
Q |
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| ||||||||||| |||| | ||||||||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
42853207 |
aggagggcctgttaaaagattctctctctaaggttttttctggatcccatgttaattttcttttcact |
42853274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 237
Target Start/End: Original strand, 27219 - 27397
Alignment:
| Q |
59 |
caataatagatattttacattttaccttccagctttgtgatcttaatgcaacggcatcaacagccaattactgaaatgcagaaagggaggattacagatc |
158 |
Q |
| |
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||||||| |||||||||||||||| || ||||| || || ||| | | ||||||||| |||||||||| |||||| || ||| ||||||||| |||| |
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| T |
27219 |
caataattaatattttacattttacattgcagctgtgagacgttatttcgacggcatcagcagccaattagtgaaattcaaaaaaggaggattaaggatc |
27318 |
T |
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| Q |
159 |
tttcaaaacgcctggacgagggcctgttcaaagctgctctctctaaggttttttctggatctcatttcaattttctttt |
237 |
Q |
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|| ||||||||||||| |||||| |||| ||| ||||| ||||||||||||||||||| |||| ||| |||| |||| |
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| T |
27319 |
ttgcaaaacgcctggaggagggcatgttaaaaaatgctccttctaaggttttttctggatatcatgtcatttttatttt |
27397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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