View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18263_high_22 (Length: 237)

Name: NF18263_high_22
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18263_high_22
NF18263_high_22
[»] chr5 (2 HSPs)
chr5 (1-72)||(3982646-3982717)
chr5 (174-237)||(3982714-3982777)
[»] chr4 (1 HSPs)
chr4 (103-151)||(12441202-12441250)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3982646 - 3982717
Alignment:
Q  1 tcgtatttaattattttgtggatcgattcagaatgtgaaaaatgcattttatgtttattgattctgttatca 72  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  3982646 tcgtatttaattattttgtggattgcttcagaatgtgaaaaatgcattttatgtttattgattctgttatca 3982717  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 3982714 - 3982777
Alignment:
Q  174 atcagaagtgtttgacttttcctccctaattcttactaggataccagccagatcacatgcacct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3982714 atcagaagtgtttgacttttcctccctaattcttactaggataccagccagatcacatgcacct 3982777  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 12441250 - 12441202
Alignment:
Q  103 caacactgacacgtcgacaccagtaaaattttgaaaaaatgaactaacc 151  Q
    |||||||||||| ||||||||||| ||| |||||||||||||| |||||    
T  12441250 caacactgacacatcgacaccagtcaaaatttgaaaaaatgaattaacc 12441202  T

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