View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_high_3 (Length: 553)
Name: NF18263_high_3
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 50102327 - 50102860
Alignment:
| Q |
1 |
gtttgttataagtaaaatttgtcatgaactgcattatttgattcttaacactgaattccccatagtgcatattatctcattatcgtggaaggcttgttgt |
100 |
Q |
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| T |
50102327 |
gtttgttataagtaaaatttgtcatgaactgcattatttgattcttaacactgaattccccatagtgcatattatctcattatcgtggaaggcttgttgt |
50102426 |
T |
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| Q |
101 |
catttgtatgtaaaattattaagaaagcccaaaacatgcaaggaaaatgcaatttagcttggagattgaatatatattaattatttaaattggataactt |
200 |
Q |
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| T |
50102427 |
catttgtatgtaaaattattaagaaagcccaaaacatgcaaggaaaatgcaatttagcttggagattgaatatatattaattatttaaattggataactt |
50102526 |
T |
|
| Q |
201 |
tgtcaaacttcattctcgttcatatactttctatttttctgttgatggcttcctatccattattagataccggtccatccttagtttctttgtagattta |
300 |
Q |
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| T |
50102527 |
tgtcaaacttcattctcgttcatatactttctatttttctgttgatggcttcctatccattattagataccggtccatccttagtttctttgtagattta |
50102626 |
T |
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| Q |
301 |
agtttaatttttactcctaccagggaataccacctgttggtaaagcactgcacggttctgataaatgggtgaccgctctctctaagaaactgactacttg |
400 |
Q |
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| T |
50102627 |
agtttaatttttactcctaccagggaataccacctgttggtaaagcactgcacgattctgataaatgggtgaccgctctctctaagaaactgactacttg |
50102726 |
T |
|
| Q |
401 |
gtggccatgggtgagtcatcaatagattgcttaagtttgtttttatattttttcttcccgttgctgataacatttattgctttgttttgttggctggcta |
500 |
Q |
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| T |
50102727 |
gtggccatgggtgagtcatcaatagattgcttaagtttgtttttatattttttcttcccgttgctgataccatttattgctttgttttgttggctggcta |
50102826 |
T |
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| Q |
501 |
tttgctttaggttgctgaggggaagaatccactt |
534 |
Q |
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| T |
50102827 |
tttgctttaggttgctgaggggaagaatccactt |
50102860 |
T |
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