View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18263_high_7 (Length: 409)

Name: NF18263_high_7
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18263_high_7
NF18263_high_7
[»] chr1 (2 HSPs)
chr1 (174-391)||(29494874-29495089)
chr1 (38-103)||(29494737-29494801)
[»] chr7 (4 HSPs)
chr7 (174-391)||(6607944-6608159)
chr7 (174-391)||(6625947-6626156)
chr7 (38-103)||(6626652-6626717)
chr7 (38-103)||(6607504-6607564)
[»] chr6 (2 HSPs)
chr6 (196-391)||(19843237-19843430)
chr6 (34-103)||(19843075-19843144)
[»] chr3 (1 HSPs)
chr3 (196-376)||(9793666-9793838)
[»] chr2 (1 HSPs)
chr2 (1-38)||(42836944-42836981)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 174 - 391
Target Start/End: Original strand, 29494874 - 29495089
Alignment:
Q  174 ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc 273  Q
    ||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||    
T  29494874 ctgtagcagaggattcgtcccatctccctctcccatgccatttcccttttctcccaactctagcacctc--gcgagatttcaccgtcgccgccgtcgatc 29494971  T
Q  274 ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag 373  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  29494972 ttcgactctcccctttcacccgtcgctgattgaaatccattgtgtctccattattatctatttgtgctctctctcgtcgccggttttctttcaaccgtag 29495071  T
Q  374 cacgcttgccgacactct 391  Q
    |||||| |||||||||||    
T  29495072 cacgctcgccgacactct 29495089  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 29494737 - 29494801
Alignment:
Q  38 agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29494737 agagcactgatacccataccaccataggtggcataccactcataca-ccctcttgtgtggcacatt 29494801  T

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Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 174 - 391
Target Start/End: Original strand, 6607944 - 6608159
Alignment:
Q  174 ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc 273  Q
    |||||| |||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||| ||  ||||||| ||||||||  |||||||     
T  6607944 ctgtagtagaggattgggcccatctctctctctcatgccatttcccttttctcccaaccctagcacctcacg--agatttcgccgtcgccgtcgtcgata 6608041  T
Q  274 ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag 373  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |  |||||||| ||| ||||    
T  6608042 ttcgattctcccctttcacccatcgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttcttttaactgtag 6608141  T
Q  374 cacgcttgccgacactct 391  Q
    ||| || |||||| ||||    
T  6608142 caccctcgccgacgctct 6608159  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 174 - 391
Target Start/End: Complemental strand, 6626156 - 6625947
Alignment:
Q  174 ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc 273  Q
    |||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||||| ||||||      |||||     
T  6626156 ctgtagtagaggattgggcccatctctctctcccatgccatttcccttttctcccaaccctagcacctcacg--agatttcgccgtcg------tcgata 6626065  T
Q  274 ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag 373  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |  |||||||||||| ||||    
T  6626064 ttcgattctcccctttcacccatcgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttctttcaactgtag 6625965  T
Q  374 cacgcttgccgacactct 391  Q
    ||| || |||||| ||||    
T  6625964 caccctcgccgacgctct 6625947  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 6626717 - 6626652
Alignment:
Q  38 agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt 103  Q
    ||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||| |||||||    
T  6626717 agagcactgatacacatatctccatagctggcataccactcatacacccctcttgtgtagcacatt 6626652  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 6607504 - 6607564
Alignment:
Q  38 agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt 103  Q
    ||||||||||||| |||||| |||||| |||||||     |||||||||||||||||| |||||||    
T  6607504 agagcactgatacacatacctccatagctggcata-----catacacccctcttgtgtagcacatt 6607564  T

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Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 196 - 391
Target Start/End: Original strand, 19843237 - 19843430
Alignment:
Q  196 tctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatcttcgattctcccctttcacccg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||||||||||| ||  ||| ||||||||||||||||||||||||||    
T  19843237 tctctctctcccatgccatttcccttttctcccaaccctagcacctcacg--agatttcaccgtcaccgtcgttgatcttcgattctcccctttcacccg 19843334  T
Q  296 tcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtagcacgcttgccgacactct 391  Q
     ||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |  |||||||||||| ||||||| || |||||| ||||    
T  19843335 ccgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttctttcaactgtagcaccctcgccgacgctct 19843430  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 19843075 - 19843144
Alignment:
Q  34 ttatagagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt 103  Q
    ||||||||||||| ||  |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  19843075 ttatagagcactgttatacatacctccatagctggcataccactcatacacccctcttgtgtggcacatt 19843144  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 376
Target Start/End: Complemental strand, 9793838 - 9793666
Alignment:
Q  196 tctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatcttcgattctcccctttcacccg 295  Q
    |||||||| |||||||  ||||||||| ||||||||||||||||||   || ||||||||| |||       |||||| ||||| ||||||||||||| |    
T  9793838 tctctctcccccatgccctttccctttcctcccaaccctagcacctt--gcaagatttcactgtct------tcgatcatcgatcctcccctttcacctg 9793747  T
Q  296 tcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtagcac 376  Q
    |||| ||||||||||||| | |||||||||||| |   ||||||||||||| || |  |  ||||||||||||||||||||    
T  9793746 tcgctgattgaaatccatcgcgtctccattattcttcctttgtgctctctctcgccagcggttttctttcaaccgtagcac 9793666  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42836981 - 42836944
Alignment:
Q  1 gcttttgtttatctcgtttaaaaatataataatttata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42836981 gcttttgtttatctcgtttaaaaatataataatttata 42836944  T

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