View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_high_9 (Length: 404)
Name: NF18263_high_9
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 56 - 389
Target Start/End: Complemental strand, 42837308 - 42836980
Alignment:
| Q |
56 |
acaaaattaggtataacagattgtacagaagaaagcatgtccatgtgcgacttgtgttgagtttctatgcgagctttaagactgtttataccttcatctg |
155 |
Q |
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| T |
42837308 |
acaaaattaggtataacagattgtacagaagaaagcatgtacatgtgcgacttgtgttgagtttctatgcgagctttaagactgtttataccttcatctg |
42837209 |
T |
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| Q |
156 |
tctccatctccattgatgatgaatgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaagcggcgcggctac |
255 |
Q |
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| T |
42837208 |
tctccatctccattgatgatgaatgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaag-----cggctac |
42837114 |
T |
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| Q |
256 |
cacgagcaacttctcttgggttttccggtgagttggtagtttctaatacactatgtcgatctagggttttggttttattgtttaaaacaaggattactct |
355 |
Q |
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| T |
42837113 |
cacgagcaactcctcttgggttttccggtgagttggtagtttctaatacactatgtcgatctagggttttggttttattgtttaaaacaaggattactct |
42837014 |
T |
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| Q |
356 |
ggtcttatatagtagagaatacttggtattgggc |
389 |
Q |
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| T |
42837013 |
ggtcttatatagtagagaatacttggtattgggc |
42836980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 43915004 - 43915079
Alignment:
| Q |
56 |
acaaaattaggtataacagattgtacagaagaaagcatgtccatgtgcgacttgtgttgagtttctatgcgagctt |
131 |
Q |
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| T |
43915004 |
acaagattaggtataacggattgtacagaagaaagcatgtccatgtgtgacttgtgttgggtttctatgcgagctt |
43915079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 43915105 - 43915156
Alignment:
| Q |
136 |
actgtttataccttcatctgtctccatctccattgatgatgaatgattgatt |
187 |
Q |
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|||||||| |||||||||||||||||| | ||| ||||||||||||| |||| |
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| T |
43915105 |
actgtttaaaccttcatctgtctccatgttcatggatgatgaatgatggatt |
43915156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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