View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_low_1 (Length: 716)
Name: NF18263_low_1
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 83 - 716
Target Start/End: Complemental strand, 6735568 - 6734935
Alignment:
| Q |
83 |
gaagcagaatgaacagtgttgtaccattaatcaaacattaacttaaggggtgcaaattttaaattttagacagcaaagacaaatcaaacttcaaattcaa |
182 |
Q |
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|||||||||||| |||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6735568 |
gaagcagaatgatcagtcttgtttcattaatcgaacattaacttaaggagtgcaaattttaaattttagacagcaaagccaaatcaaacttcaaattcaa |
6735469 |
T |
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| Q |
183 |
atatgtaaaccaatcacagtactctctactcagtgaggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtag |
282 |
Q |
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|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6735468 |
gtatgaaaaccaatcacagtagccactactcagtgaggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtag |
6735369 |
T |
|
| Q |
283 |
gttctcaattgcagcatatcctctagcattctcatacttcccagtcccaccaatcactgctatctcagattctggcgacgccgtcctatgaatcccaaac |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6735368 |
gttctcaattgcagcatatcctctagcattctcatacttcccagtcccaccaatcactgctatctcagattctggcgacgccgtcctatgaatcccaaac |
6735269 |
T |
|
| Q |
383 |
agacttatagtgtcatcagctccatcatgatgctcagccccatgcaccaaaacagtaagcacaatggtcttactagtaccatccaatgagcttgccaagt |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6735268 |
agacttatagtgtcatcagctccatcatgatgctcagccccatgcaccaaaacagtaagcacaatggtcttactagtaccatccaatgagcttgccaagt |
6735169 |
T |
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| Q |
483 |
aaaacccttgtgctcttcctatcacagaagaatctagctcatgttcttctgttaactggtcatcaatcactgtcacagaaccaaacataagcttctggac |
582 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6735168 |
aaaacccctgtgctcttcctatcacagaagaatccagctcatgctcttctgttaactggtcatcaattactgtcacagaaccaaacataagcttctggac |
6735069 |
T |
|
| Q |
583 |
tgtaaacccaccaggaagattaccggccgaaacaaaaggctggttgttgccgccggaaacagtgttacttgtgccactgtttttgaacacagtcgaggat |
682 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6735068 |
tgtaaacccaccaggaagattacccgccgaaacaaaaggttgattgttgcctccggaaacagtgttacttgtgccactgtttttgaatacagtcgaggat |
6734969 |
T |
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| Q |
683 |
tgagcagcactgagacctacaaggtttgggagat |
716 |
Q |
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| T |
6734968 |
tgagcagcactgagacctacaaggtttgggagat |
6734935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 218 - 636
Target Start/End: Original strand, 52199609 - 52200027
Alignment:
| Q |
218 |
aggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtaggttctcaattgcagcatatcctctagcattctcat |
317 |
Q |
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||||||||| |||||| | ||||||||| | ||||| |||||||| || ||||| ||||| || |||||| || |||||||| || |||||||| | |
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| T |
52199609 |
aggtagatatcgaaatggatgatggtgtcgactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgt |
52199708 |
T |
|
| Q |
318 |
acttcccagtcccaccaatcactgctatctcagattctggcgacgccgtcctatgaatcccaaacagacttatagtgtcatcagctccatcatgatgctc |
417 |
Q |
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|||| ||| |||||||||||||||| | ||||||| |||| || ||||| |||| ||||||| |||||| ||||||| | |||||||||| | |
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| T |
52199709 |
acttaccactcccaccaatcactgcaacttcagatttcagcgatgctgtcctgtgaactccaaacaagcttatactgtcatccacgccatcatgatcatt |
52199808 |
T |
|
| Q |
418 |
agccccatgcaccaaaacagtaagcacaatggtcttactagtaccatccaatgagcttgccaagtaaaacccttgtgctcttcctatcacagaagaatct |
517 |
Q |
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| T |
52199809 |
acctccatgcagaaacaccgtcatcacaacactttgactagtaccatccaatgagctagccgtgtagaacccttgtgctcttccaaccacgcccgaatcc |
52199908 |
T |
|
| Q |
518 |
agctcatgttcttctgttaactggtcatcaatcactgtcacagaaccaaacataagcttctggactgtaaacccaccaggaagattaccggccgaaacaa |
617 |
Q |
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||||| || |||| || ||||| ||||| |||||||||||||| |||||||| | |||||| ||||| || || || ||||| || || || ||||||| |
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| T |
52199909 |
agctcgtgcccttcagtcaactgatcatcgatcactgtcacagacccaaacatcaacttctgaactgttaatcctcctggaaggttccctgctgaaacaa |
52200008 |
T |
|
| Q |
618 |
aaggctggttgttgccgcc |
636 |
Q |
| |
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| ||||| ||||||||||| |
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| T |
52200009 |
acggctgattgttgccgcc |
52200027 |
T |
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