View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_low_11 (Length: 396)
Name: NF18263_low_11
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 41883473 - 41883778
Alignment:
| Q |
17 |
cagagaagaagcacttgactgttgcggcagtagtgaattttgcaggtaccacctacaacattcatcttgtccatgtgataataacatggtaaccaccatt |
116 |
Q |
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| T |
41883473 |
cagagaagaagcacctgactgttgcggcagtagtgaattttgcaggtaccacctacaacattcatcttgtccatgtgataataacatggtaaccaccatt |
41883572 |
T |
|
| Q |
117 |
gaataaccgcaccattgccatagccaaatgggctttccatctgtcacttcccattgctgttgccattgaaattctagcttaatttctgaaattcaagttg |
216 |
Q |
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| T |
41883573 |
gaataaccgcaccattgccatagccaaatgggctttccatctgtcacttcccattgctgttgccattgaaattctagcttaatttctgaaattcaagttg |
41883672 |
T |
|
| Q |
217 |
ttaccaaacctgatggctcctttccttcatgttaaagtcacaaaattattcttattagtacatgtgtaatattacacatttaaacatagaattattctta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
41883673 |
ttaccaaacctgatggctcctttccttcatgttaaagtcacaaaattattcttattagtacatgtgtaatattacacatttcgacataaaattattctta |
41883772 |
T |
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| Q |
317 |
ttagta |
322 |
Q |
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|||||| |
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| T |
41883773 |
ttagta |
41883778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 258 - 378
Target Start/End: Original strand, 41883760 - 41883879
Alignment:
| Q |
258 |
aaaattattcttattagtacatgtgtaatattacacatttaaacatagaattattcttattagtaattgcaggtgagttattgtgataagttaatagtaa |
357 |
Q |
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| T |
41883760 |
aaaattattcttattagtaca-gtgtaatattacacatttaaacataaaattattcttattagtaattgcaggtgagttattgtgataagttaatagtaa |
41883858 |
T |
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| Q |
358 |
aatacaataagttaggggggt |
378 |
Q |
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| T |
41883859 |
aatacaataagttaggggggt |
41883879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 10267704 - 10267796
Alignment:
| Q |
95 |
taataacatggtaaccaccattgaataaccgcaccattgccatagccaaatgggctttccatctgtcacttcccattgctgttgccattgaaa |
187 |
Q |
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||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
10267704 |
taataacgtggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgtgtcacttcccattggtgttgccattgaaa |
10267796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 10267915 - 10267958
Alignment:
| Q |
218 |
taccaaacctgatggctcctttccttcatgttaaagtcacaaaa |
261 |
Q |
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| T |
10267915 |
taccaaacctgatggttcctttccttcgtgttaaagtcacaaaa |
10267958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 36372343 - 36372315
Alignment:
| Q |
27 |
gcacttgactgttgcggcagtagtgaatt |
55 |
Q |
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| T |
36372343 |
gcacttgactgttgcggcagtagtgaatt |
36372315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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