View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18263_low_12 (Length: 352)

Name: NF18263_low_12
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18263_low_12
NF18263_low_12
[»] chr6 (5 HSPs)
chr6 (145-333)||(4261081-4261269)
chr6 (168-317)||(4267980-4268129)
chr6 (206-333)||(4300929-4301056)
chr6 (122-175)||(4300808-4300861)
chr6 (80-126)||(4267938-4267984)
[»] chr5 (8 HSPs)
chr5 (153-310)||(24102184-24102341)
chr5 (229-314)||(24106410-24106494)
chr5 (80-174)||(24106528-24106622)
chr5 (122-171)||(24106747-24106796)
chr5 (228-288)||(24044662-24044722)
chr5 (93-176)||(24047454-24047537)
chr5 (80-129)||(24044766-24044815)
chr5 (80-129)||(24052948-24052997)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 145 - 333
Target Start/End: Original strand, 4261081 - 4261269
Alignment:
Q  145 aaatatccaaacattactttaaaatttccaatcaatcaacatctaactttatgtgcatagtacgaatccatatttcgtttgcaaagttaggaaaatacta 244  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  4261081 aaatatctaaacattactttaaaatttccaatcaatcaacatctaactttaagtgcatagtacgaatccatatttcgtttgcgaagttaggaaaatacta 4261180  T
Q  245 tattcctaatcaatcaacatttctgcggtacctatggtttgaatggtggccttagaactgtgtatgcttaggcctccaccttgtttctt 333  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  4261181 tattcctaatcaatcaacatttctgcggtatctatggtttgaatggtggccttagaactgtttatgcttaggccttcaccttgtttctt 4261269  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 168 - 317
Target Start/End: Original strand, 4267980 - 4268129
Alignment:
Q  168 atttccaatcaatcaacatctaactttatgtgcatagtacgaatccatatttcgtttgcaaagttaggaaaatactatattcctaatcaatcaacatttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |    
T  4267980 atttccaatcaatcaacatctaaatttaagtgcatagtacgaatccatatttcgtttgcgaagttaggaaaatattatatttctaatcaatcaacattgc 4268079  T
Q  268 tgcggtacctatggtttgaatggtggccttagaactgtgtatgcttaggc 317  Q
     |||||| |||| ||||||||||||||||||||||| |||||| ||||||    
T  4268080 cgcggtatctattgtttgaatggtggccttagaactttgtatgtttaggc 4268129  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 333
Target Start/End: Original strand, 4300929 - 4301056
Alignment:
Q  206 acgaatccatatttcgtttgcaaagttaggaaaatactatattcctaatcaatcaacatttctgcggtacctatggtttgaatggtggccttagaactgt 305  Q
    ||||||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||| |  ||| || |||||||||||||||| |||||||| |    
T  4300929 acgaatccatatttcatttgcgaagataggaaactaatatattcctaatcaatcaacatttcagaagtatctgtggtttgaatggtggctttagaacttt 4301028  T
Q  306 gtatgcttaggcctccaccttgtttctt 333  Q
    ||||| ||| || | |||| ||||||||    
T  4301029 gtatgtttatgctttcaccatgtttctt 4301056  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 4300808 - 4300861
Alignment:
Q  122 atttcaaatatccttatagcctaaaatatccaaacattactttaaaatttccaa 175  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  4300808 atttcaaatatccttacagcctaaaatatctaaacattactttaaaatttccaa 4300861  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 4267938 - 4267984
Alignment:
Q  80 ttcaaaatttctaacattactttaaatttccatttgatgaccatttc 126  Q
    |||||| |||||||||||||||||||||||  | |||||||||||||    
T  4267938 ttcaaattttctaacattactttaaatttctgtctgatgaccatttc 4267984  T

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Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 153 - 310
Target Start/End: Complemental strand, 24102341 - 24102184
Alignment:
Q  153 aaacattactttaaaatttccaatcaatcaacatctaactttatgtgcatagtacgaatccatatttcgtttgcaaagttaggaaaatactatattccta 252  Q
    ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||    
T  24102341 aaacattacattaaaatttccaatcaatcaacatctaattttaagtgcatagtacgaatccatatttcgtttgcgaagttaggaaaatattatattcgta 24102242  T
Q  253 atcaatcaacatttctgcggtacctatggtttgaatggtggccttagaactgtgtatg 310  Q
    ||||||||||||||| |||||| || |||||||||| |||||||||||||| ||||||    
T  24102241 atcaatcaacatttccgcggtatctgtggtttgaatcgtggccttagaactttgtatg 24102184  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 24106494 - 24106410
Alignment:
Q  229 agttaggaaaatactatattcctaatcaatcaacatttctgcggtacctatggtttgaatggtggccttagaactgtgtatgctta 314  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||  || |||||||||| |||||||||||||||||||||||||    
T  24106494 agttaagaaaatattatattcctaatcaatcaacatttctgccgtgtctgtggtttgaat-gtggccttagaactgtgtatgctta 24106410  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 24106622 - 24106528
Alignment:
Q  80 ttcaaaatttctaacattactttaaatttccatttgatgaccatttcaaatatccttatagcctaaaatatccaaacattactttaaaatttcca 174  Q
    |||||| |||| |||||||||||| ||||| || |||| ||| |||||||||||||||  | ||||||||||  |||||||||||||||||||||    
T  24106622 ttcaaattttcgaacattactttacatttctatctgataaccctttcaaatatccttacggtctaaaatatcttaacattactttaaaatttcca 24106528  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 24106796 - 24106747
Alignment:
Q  122 atttcaaatatccttatagcctaaaatatccaaacattactttaaaattt 171  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  24106796 atttcaaatatccttgcagcctaaaatatctaaacattactttaaaattt 24106747  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 24044722 - 24044662
Alignment:
Q  228 aagttaggaaaatactatattcctaatcaatcaacatttctgcggtacctatggtttgaat 288  Q
    ||||| ||||||||  ||||||||||||||||||||||||||| ||| || ||||||||||    
T  24044722 aagttgggaaaatataatattcctaatcaatcaacatttctgcagtatctgtggtttgaat 24044662  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 24047537 - 24047454
Alignment:
Q  93 acattactttaaatttccatttgatgaccatttcaaatatccttatagcctaaaatatccaaacattactttaaaatttccaat 176  Q
    |||||||||  |||||| || |||||||||||||| ||||||||| ||| |  ||| || |||||| |||||||| ||||||||    
T  24047537 acattacttcgaatttctatctgatgaccatttcatatatccttacagctttcaatttctaaacatcactttaaattttccaat 24047454  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 24044815 - 24044766
Alignment:
Q  80 ttcaaaatttctaacattactttaaatttccatttgatgaccatttcaaa 129  Q
    |||||| ||||||| |||||||||||||||  | ||||||||||||||||    
T  24044815 ttcaaattttctaaaattactttaaatttctttctgatgaccatttcaaa 24044766  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 24052997 - 24052948
Alignment:
Q  80 ttcaaaatttctaacattactttaaatttccatttgatgaccatttcaaa 129  Q
    |||||| |||||||| ||||||||||||||  | ||||||||||||||||    
T  24052997 ttcaaattttctaactttactttaaatttctttctgatgaccatttcaaa 24052948  T

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