View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18263_low_15 (Length: 280)

Name: NF18263_low_15
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18263_low_15
NF18263_low_15
[»] chr5 (19 HSPs)
chr5 (1-264)||(30061011-30061274)
chr5 (1-264)||(30750285-30750548)
chr5 (43-264)||(30676492-30676713)
chr5 (43-264)||(30337729-30337950)
chr5 (35-230)||(30241619-30241814)
chr5 (43-264)||(30436494-30436715)
chr5 (43-264)||(30484082-30484303)
chr5 (43-234)||(30400755-30400946)
chr5 (43-264)||(30712632-30712853)
chr5 (43-242)||(29853992-29854191)
chr5 (51-234)||(30207211-30207394)
chr5 (44-242)||(29872856-29873054)
chr5 (62-226)||(30520867-30521031)
chr5 (62-226)||(30561207-30561371)
chr5 (51-233)||(17417828-17418010)
chr5 (62-214)||(30476075-30476227)
chr5 (63-114)||(17983599-17983650)
chr5 (43-137)||(30330510-30330604)
chr5 (172-205)||(15452794-15452827)
[»] chr7 (1 HSPs)
chr7 (43-264)||(26708013-26708234)
[»] chr4 (2 HSPs)
chr4 (43-264)||(20295786-20296007)
chr4 (43-224)||(52352640-52352821)
[»] chr3 (1 HSPs)
chr3 (45-234)||(25293181-25293370)
[»] chr1 (2 HSPs)
chr1 (62-234)||(7580953-7581125)
chr1 (62-234)||(7100121-7100293)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 30061011 - 30061274
Alignment:
Q  1 cagagagacaagacaaatgatgatgagtttggtgtgttcttgtgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatcc 100  Q
    |||||||| |||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061011 cagagagagaagacaaacgatgatgagtttggtatgttcctgtgatcgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatcc 30061110  T
Q  101 agaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatat 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  30061111 acaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgttgattttgattccacacatcatccaaaaccagcaaatat 30061210  T
Q  201 cttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacact 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30061211 cttttcccttgcaacaatccttgcacctctctttccattacagcataatcaaagtcaggacact 30061274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 30750285 - 30750548
Alignment:
Q  1 cagagagacaagacaaatgatgatgagtttggtgtgttcttgtgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatcc 100  Q
    |||||||| |||||||| ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30750285 cagagagagaagacaaacgatgatgagtttggcatgttcctgtgattgttgcaacaacttcatcacgggtggacaataaaatggaactacctttggatcc 30750384  T
Q  101 agaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatat 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| || |||||||    
T  30750385 acaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgttcattttgattccatacatcatccaaaaccaacaaatat 30750484  T
Q  201 cttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacact 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750485 cttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacact 30750548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 43 - 264
Target Start/End: Complemental strand, 30676713 - 30676492
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    |||||| ||||||| | |||||||| |||||||||||||||||||||||||| |||||| | ||||| |||| ||||||    |||||| | ||| ||||    
T  30676713 tgattgatgcaacatcctcatcacgagtggacactaaaatggaactacctttagatccacacgacaaaacagatttcaaacgattccatctatcttgtgt 30676614  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30676613 taacccagattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttccttccattaca 30676514  T
Q  243 gcatactcaaagtcaggacact 264  Q
    ||||||||||||||||||||||    
T  30676513 gcatactcaaagtcaggacact 30676492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 43 - 264
Target Start/End: Complemental strand, 30337950 - 30337729
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    |||||| ||||||| | |||||||| |||||||||||||||||||||||||| |||||| | ||||| |||| ||||||    |||||| | ||| ||||    
T  30337950 tgattgatgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatctatcttgtgt 30337851  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30337850 taacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttccttccattaca 30337751  T
Q  243 gcatactcaaagtcaggacact 264  Q
    ||||| ||||||||||||||||    
T  30337750 gcataatcaaagtcaggacact 30337729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 30241814 - 30241619
Alignment:
Q  35 tgttcttgtgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttc 134  Q
    |||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||    
T  30241814 tgtttttgtgattgttgcaacaacctcatcacgagtggatactaaaatggaactacctttggatccacatgacaacacagatttcaatgtgttccatttc 30241715  T
Q  135 tctcgtgttaaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcaccttt 230  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||| |||| ||||| |||||| | |||||||||    
T  30241714 tctcgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaactagcaaatatattttaccttgtaacaattcctgcaccttt 30241619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 43 - 264
Target Start/End: Original strand, 30436494 - 30436715
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||| | ||||| |||| |||||| |  | |||| | ||| ||||    
T  30436494 tgattgttgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaatgatcccatctatcttgtgt 30436593  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    ||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30436594 taacccaaattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattaca 30436693  T
Q  243 gcatactcaaagtcaggacact 264  Q
     |  | |||||||||| |||||    
T  30436694 tctaaatcaaagtcagcacact 30436715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 43 - 264
Target Start/End: Original strand, 30484082 - 30484303
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||| | ||||| |||| ||||||    |||||| | ||| ||||    
T  30484082 tgattgttgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatctatcttgtgt 30484181  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  |||    
T  30484182 taacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttccgttgcaacaatccttgcacctttctttccaagaca 30484281  T
Q  243 gcatactcaaagtcaggacact 264  Q
     |  ||||||||||| ||||||    
T  30484282 tctaactcaaagtcatgacact 30484303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 30400755 - 30400946
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||| |||| ||||||    |||||| | ||| ||||    
T  30400755 tgattgttgcaacaactttatcacgggtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatctatcttgtgt 30400854  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttcttt 234  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||    
T  30400855 taacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattctcccttgcaacaattcttgcacctttcttt 30400946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 43 - 264
Target Start/End: Complemental strand, 30712853 - 30712632
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||||||||| |||||| | ||||| |||| ||| ||    | |||| | ||| ||||    
T  30712853 tgatagttgcaacaacctcatcacgggtggacaataaaatggaactaccttttgatccacacgacaaaacagattttaaacgatcccatctatcttgtgt 30712754  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||  |||    
T  30712753 taacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcagctttctttccaagaca 30712654  T
Q  243 gcatactcaaagtcaggacact 264  Q
     |  ||||||||||||||||||    
T  30712653 tctaactcaaagtcaggacact 30712632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 29853992 - 29854191
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||| | ||||||||||  ||||| |  |||||||| ||| ||||    
T  29853992 tgattgttgcaacaaatttatcacgagtggacactaaaatggaactaccttttgatccacacgacaacacagacttcaaatgattccatttatcttgtgt 29854091  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    ||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||| |||||||| ||||||||| ||||    
T  29854092 taacccatattccaattgttgattttgattccacacatcatccaaaaccagcaaatatattttaccttgcaacaattcttgcacccttctttccaataca 29854191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 30207211 - 30207394
Alignment:
Q  51 gcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctg 150  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||| | || ||||| | ||||| | | |||||||||||| |  |||| ||      
T  30207211 gcaacaacctcatcacgagtggacactaaaatggaactacctttggatccacacgataacactgatttcagtatattccatttctcttggcttaatccga 30207310  T
Q  151 attccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttcttt 234  Q
    |||||||||| |||||||   ||||||||||||||||||||||||||||| |||| ||||||| |||| | |||||||||||||    
T  30207311 attccaattgctgatttttgttccacacatcatccaaaatcagcaaatatattttaccttgcagcaattcctgcacctttcttt 30207394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 29872856 - 29873054
Alignment:
Q  44 gattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgtt 143  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||||  ||||| |  ||||| || ||  |||||    
T  29872856 gattgttgcaacaactttatcacgggtggacactaaaatggaactaccttttgatccacacgacaacacagacttcaaatgattccacttatcatgtgtt 29872955  T
Q  144 aaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    |  || ||||||||||||||  |||   |||||| |||||||||||  ||||||||| |||| ||||||| || | |||||||||||||||||||||||    
T  29872956 agtccagattccaattgttgggttttgttccacagatcatccaaaacgagcaaatattttttaccttgcagcacttcttgcacctttctttccattaca 29873054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 30521031 - 30520867
Alignment:
Q  62 atcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgt 161  Q
    |||||| ||||| |||||||||||   ||||||||||||||  |||||||| | |||||| || |||||||||||| |  |||| ||  |||||| || |    
T  30521031 atcacgagtggagactaaaatggatgaacctttggatccagttgacaacacggatttcaacttattccatttctcttggcttaatccaaattccagttct 30520932  T
Q  162 tgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcac 226  Q
    ||||||    ||||||||||||||||||  |||||||||||||| |||| ||||||| |||||||    
T  30520931 tgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcac 30520867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 30561371 - 30561207
Alignment:
Q  62 atcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgt 161  Q
    |||||| ||||| |||||||||||   ||||||||||||||  |||||||| | |||||| || |||||||||||| |  |||| ||  |||||| || |    
T  30561371 atcacgagtggagactaaaatggatgaacctttggatccagttgacaacacggatttcaacttattccatttctcttggcttaatccaaattccagttct 30561272  T
Q  162 tgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcac 226  Q
    ||||||    ||||||||||||||||||  |||||||||||||| |||| ||||||| |||||||    
T  30561271 tgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcac 30561207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 17418010 - 17417828
Alignment:
Q  51 gcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctg 150  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||| |    ||||| | ||||||  | |||||||||||| |  |||| ||      
T  17418010 gcaacaacctcatcacgagtggacactaaaatggaactacctttggatccacacataaacactgatttcaacgtattccatttctcttggcttaatccga 17417911  T
Q  151 attccaattgttg-attttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctt 233  Q
    || | |||||||| ||||||  |||||||||| ||||||| ||| ||||||||||| |||| ||| | | ||| ||||||||||    
T  17417910 atgctaattgttgcattttg-ttccacacatcgtccaaaaccagaaaatatcttttacctttcaatagttctttcacctttctt 17417828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 30476075 - 30476227
Alignment:
Q  62 atcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgt 161  Q
    |||||| ||||| ||||||||||||   |||||||||||| | |||||| ||| |||||| ||||||||||| ||| |  |||| |||  |||||||  |    
T  30476075 atcacgagtggaaactaaaatggaagatcctttggatccacatgacaacgcagatttcaacttgttccatttgtcttggcttaatcctagttccaatcct 30476174  T
Q  162 tgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaa 214  Q
    ||||||    |||| ||||||||||||| ||||||| ||||||| ||||||||    
T  30476175 tgatttctgctccatacatcatccaaaaccagcaaaaatcttttaccttgcaa 30476227  T

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Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 17983599 - 17983650
Alignment:
Q  63 tcacgggtggacactaaaatggaactacctttggatccagaagacaacacag 114  Q
    ||||| || ||||||||||||||| |||||||||||||| ||||||||||||    
T  17983599 tcacgagtagacactaaaatggaagtacctttggatccacaagacaacacag 17983650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 30330604 - 30330510
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctct 137  Q
    ||||||| |||||||| |||||| | |||||| | |||||| |||||||||||||| || | |||||||||  ||||||  | ||||||||||||    
T  30330604 tgattgtcgcaacaacctcatcaggagtggacgcaaaaatgaaactacctttggatacacacgacaacacatatttcaacatattccatttctct 30330510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 15452827 - 15452794
Alignment:
Q  172 tccacacatcatccaaaatcagcaaatatctttt 205  Q
    ||||||||||||||||||| ||||||||||||||    
T  15452827 tccacacatcatccaaaattagcaaatatctttt 15452794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 43 - 264
Target Start/End: Original strand, 26708013 - 26708234
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    |||||||||||||| | | |||||| |||||||||||||||||||||||||| |||||| | ||||| |||| ||||||    |||||| | ||| ||||    
T  26708013 tgattgttgcaacatccttatcacgagtggacactaaaatggaactaccttttgatccacaggacaaaacagatttcaaacgattccatctatcttgtgt 26708112  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    ||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26708113 taacccatattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattaca 26708212  T
Q  243 gcatactcaaagtcaggacact 264  Q
     |  ||||||||||||||||||    
T  26708213 tctaactcaaagtcaggacact 26708234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 43 - 264
Target Start/End: Complemental strand, 20296007 - 20295786
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    |||||||||||||| | | |||||| || ||||||||||||||||||||||| |||||| | ||||| |||| ||||||     ||||| | ||  ||||    
T  20296007 tgattgttgcaacatccttatcacgagttgacactaaaatggaactaccttttgatccacatgacaaaacagatttcaaacgagtccatatatcgggtgt 20295908  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttctttccattaca 242  Q
    |||||| ||||||||||| | ||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||     
T  20295907 taacccagattccaattgatcattttgattccacacatcatctaaaatcaacaaatatattttcccttgcaacaatccttgcacctttctttccaatacg 20295808  T
Q  243 gcatactcaaagtcaggacact 264  Q
     |  | ||||||||||||||||    
T  20295807 tctaagtcaaagtcaggacact 20295786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 52352640 - 52352821
Alignment:
Q  43 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgt 142  Q
    ||||||| |||||| | | |||||  ||||| ||||||||| ||  ||||||||||||| | |||||||||| |||||| ||||||||||| ||| |  |    
T  52352640 tgattgtcgcaacatccttatcacaagtggaaactaaaatgtaagcacctttggatccacaggacaacacagatttcaacttgttccatttttcttggct 52352739  T
Q  143 taaccctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgc 224  Q
    ||| |||  ||  |||| | |||||  | |||||||||||||||||| || |||||||||||| |||||||||||| |||||    
T  52352740 taatcctagtttgaattctagatttctattccacacatcatccaaaaccaacaaatatcttttaccttgcaacaattcttgc 52352821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 25293370 - 25293181
Alignment:
Q  45 attgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgtta 144  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||  |||||||||   ||||| |||| ||||||  | ||| |||| ||| | ||||    
T  25293370 attgtcgcaacaacctcatcacgagtggacactaaaatggaactacgattggatccaaccgacaatacagatttcaacatattcaatttttcttgggtta 25293271  T
Q  145 accctgattccaattgttgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttcttt 234  Q
    | |   |||||||||| |||||||   |||||||||| |||||||| ||||||||| |||| |||||||| | | ||| |||||||||||    
T  25293270 atctgaattccaattgctgatttttgttccacacatcgtccaaaataagcaaatatattttaccttgcaatagttcttacacctttcttt 25293181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 7581125 - 7580953
Alignment:
Q  62 atcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgt 161  Q
    |||||| || |||||||||| |||| ||||||| ||||||  ||||||||||| ||||||||| |||||||||||  |   ||  ||  |||| |||| |    
T  7581125 atcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaatttattccatttctcatggtctagtccaaattcaaattct 7581026  T
Q  162 tgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttcttt 234  Q
    ||| |||  ||||| ||||| ||||||| |||||||  |||||| |||||||||| | |||||||||||||||    
T  7581025 tgactttttatccaaacatcgtccaaaaccagcaaacgtctttttccttgcaacatttcttgcacctttcttt 7580953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 7100121 - 7100293
Alignment:
Q  62 atcacgggtggacactaaaatggaactacctttggatccagaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgt 161  Q
    |||||| || |||||||||| |||| |||||||||||||| | |||||||| | |||||| || |||||||||||| |  |||  ||  |||| |||| |    
T  7100121 atcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattct 7100220  T
Q  162 tgattttgaatccacacatcatccaaaatcagcaaatatcttttcccttgcaacaatccttgcacctttcttt 234  Q
    | |||||   |||||||||||||||||| || |||| ||||| | ||||||| || | ||||||| |||||||    
T  7100221 tcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttcttt 7100293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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