View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18263_low_16 (Length: 269)

Name: NF18263_low_16
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18263_low_16
NF18263_low_16
[»] chr4 (5 HSPs)
chr4 (1-247)||(30961038-30961284)
chr4 (19-247)||(33806012-33806239)
chr4 (19-224)||(44567168-44567371)
chr4 (19-247)||(11240216-11240443)
chr4 (108-152)||(40696107-40696151)
[»] chr1 (2 HSPs)
chr1 (19-247)||(721576-721803)
chr1 (24-247)||(38880799-38881021)
[»] chr5 (3 HSPs)
chr5 (19-247)||(42689679-42689906)
chr5 (28-247)||(16781562-16781779)
chr5 (19-247)||(23946812-23947039)
[»] chr6 (3 HSPs)
chr6 (14-190)||(8639266-8639441)
chr6 (20-184)||(8684809-8684972)
chr6 (14-245)||(1297368-1297598)
[»] chr8 (1 HSPs)
chr8 (19-247)||(45210711-45210938)
[»] chr3 (5 HSPs)
chr3 (19-247)||(37145693-37145920)
chr3 (19-190)||(17716244-17716414)
chr3 (19-190)||(19017473-19017643)
chr3 (40-245)||(53606210-53606414)
chr3 (19-73)||(53987074-53987128)
[»] chr7 (3 HSPs)
chr7 (14-166)||(42604101-42604252)
chr7 (40-245)||(46831460-46831664)
chr7 (19-247)||(48953573-48953801)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 30961038 - 30961284
Alignment:
Q  1 agaaaaaagaagaaaaccgctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30961038 agaaaaaagaagaaaaccgctagctcctaacaaagaaagtgtctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatgggtgcacta 30961137  T
Q  101 caaaatgagcatctgaattagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattag 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  30961138 caaaatgagcatctgaattagcacccaatttagcaaagaaatccacacattggttcccctctcttaaggtgtgatgaagagagatgttccgaacaattag 30961237  T
Q  201 caagtcctttatattctggatgaggacggcgtaggtgtggtatctcg 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30961238 caagtcctttatattctggatgaggacggcgtaggtgtggtatctcg 30961284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 33806239 - 33806012
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    |||| ||||||| ||||| |||||||||  |||| |||||||||||||| |||||||||||||| || || ||| || || |||| |||| |||||||||    
T  33806239 gctatctcctaataaagacagtgcctatagcatccgctctaagcagagggaggaggtcagctggcggtgattgg-tggacgacaagatgaacatctgaat 33806141  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctg 218  Q
    ||||| |||| || ||||||||||| |||||||||||| |||||||||| |||||||| |||| ||| || | |||| | ||||| |||||||| |||||    
T  33806140 tagcacccaacttggcaaagaaatccgcacattggttcccctctcttaatgtgtgatggagagtgatatttcgaacattaagcaaatcctttatgttctg 33806041  T
Q  219 gatgaggacggcgtaggtgtggtatctcg 247  Q
     |||||||||||||||||||| |||||||    
T  33806040 aatgaggacggcgtaggtgtgatatctcg 33806012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 44567371 - 44567168
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    ||||||| ||||||||||||||| ||||| || |||||||||| |||||||||||| |||| |||| ||| ||| || || | || |||||||| |||||    
T  44567371 gctagcttctaacaaagaaagtgtctatcgca-cagctctaagaagaggaaggaggacagccggagacgattgg-tggacgataagatgagcatatgaat 44567274  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctg 218  Q
    ||||| | ||||||| |||| ||||| ||||||  ||| ||||||||||||||||||||||||||||||||| | ||| ||||||||| || ||||||||    
T  44567273 tagcacctaatttagtaaagtaatctccacattcattcccctctcttaaggtgtgatgaagagagatgttccgatcaactagcaagtctttaatattctg 44567174  T
Q  219 gatgag 224  Q
     |||||    
T  44567173 aatgag 44567168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 11240443 - 11240216
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    ||||||| |||| |||| |||  |||||| ||||||||||||| ||||||| |||||||||| ||||||||||| || || |  | ||||| |||||||     
T  11240443 gctagcttctaagaaagcaagctcctatcgcatcagctctaagaagaggaatgaggtcagctagaggcgaatgg-tgaacgagcatatgagaatctgaac 11240345  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctg 218  Q
    ||||| | |||||||||||| ||||   |||||||||| ||||||||||||||||||| ||||||||||||| | ||| || |||||| || ||||| ||    
T  11240344 tagcacctaatttagcaaagtaatccaaacattggttcccctctcttaaggtgtgatggagagagatgttccgatcaactaacaagtctttaatattttg 11240245  T
Q  219 gatgaggacggcgtaggtgtggtatctcg 247  Q
     ||||| ||| ||||| ||||| ||||||    
T  11240244 aatgagcacgacgtagatgtggaatctcg 11240216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 40696107 - 40696151
Alignment:
Q  108 agcatctgaattagcatccaatttagcaaagaaatctgcacattg 152  Q
    |||||||||||||||||| |||||| ||||||| || ||||||||    
T  40696107 agcatctgaattagcatcaaatttaacaaagaagtccgcacattg 40696151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 721803 - 721576
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    |||| ||||||| ||| | |||||||||  ||||||||||||||||||| |||||||||||||||||||| ||| || || |||| ||||||||||||||    
T  721803 gctatctcctaataaaaacagtgcctatggcatcagctctaagcagagggaggaggtcagctggaggcgattgg-tggacgacaagatgagcatctgaat 721705  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctg 218  Q
    ||||| |||| |||||||||||||| || |||||| || |||||||||| |||||||| ||||||| ||||| |||||||||||| ||||||||||||||    
T  721704 tagcacccaacttagcaaagaaatccgcgcattggctcccctctcttaatgtgtgatggagagagaagttccgaacaattagcaaatcctttatattctg 721605  T
Q  219 gatgaggacggcgtaggtgtggtatctcg 247  Q
     ||||||||||||||||||||||||||||    
T  721604 aatgaggacggcgtaggtgtggtatctcg 721576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 38881021 - 38880799
Alignment:
Q  24 ctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaattagca 123  Q
    ||||||| ||| | |||| ||||  |||||| |||||||||||| |||||||||||||||||||| ||| || || |||| |||||||||||||||| ||    
T  38881021 ctcctaataaaaacagtgtctatggcatcagttctaagcagagggaggaggtcagctggaggcgattgg-tggacgacaagatgagcatctgaattaaca 38880923  T
Q  124 tccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatga 223  Q
     |||| |||||||||||||| || |||||||||  || |||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||    
T  38880922 cccaacttagcaaagaaatccgcgcattggttcctctatcttaatgtgtgatggagagagatgttccgaacaattagcaaatcctttatattctgaatga 38880823  T
Q  224 ggacggcgtaggtgtggtatctcg 247  Q
    ||||| ||||||||||||||||||    
T  38880822 ggacgacgtaggtgtggtatctcg 38880799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 42689679 - 42689906
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||||||| |||||||||||||| ||||| ||| || || |||| |||| |||||||||    
T  42689679 gctatctcctaataaagacagtgcctatagcatcagctctaagcagagggaggaggtcagctggcggcgattgg-tggacgacaagatgaacatctgaat 42689777  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctg 218  Q
    ||||| |||| || ||||||||||| |||||||||||| |||||||||| |||||||| |||||||| || | |||| | ||||| |||||||| |||||    
T  42689778 tagcacccaacttggcaaagaaatccgcacattggttcccctctcttaatgtgtgatggagagagatatttcgaacactaagcaaatcctttatgttctg 42689877  T
Q  219 gatgaggacggcgtaggtgtggtatctcg 247  Q
     |||||||||||||||||||| |||||||    
T  42689878 aatgaggacggcgtaggtgtgatatctcg 42689906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 16781779 - 16781562
Alignment:
Q  28 taacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaattagcatcca 127  Q
    |||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||||| ||| || |  ||||||||||| ||| ||||||||||||    
T  16781779 taacaaagtaagtgcctatcgcatcaattctaagcagaggaaggaggtcagctggaggcgattgg-tggaggacaaaatgagcgtctaaattagcatcca 16781681  T
Q  128 atttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggac 227  Q
    ||||||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||||||||| | ||| ||||||||| || |||||| | ||||| ||    
T  16781680 atttagcaaagtaatccacacattgattcccctctcttaaggtgtgatgaagagagatgttccgatcaactagcaagtctttaatattc-gaatgagaac 16781582  T
Q  228 ggcgtaggtgtggtatctcg 247  Q
    ||||||| ||||| ||||||    
T  16781581 ggcgtagatgtggaatctcg 16781562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 23947039 - 23946812
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||||||| |||||||||||||| || || ||| || || |||| |||| |||||||||    
T  23947039 gctatctcctaataaagatagtgcctatagcatcagctctaagcagagggaggaggtcagctggtggtgattgg-tggacgacaagatgaacatctgaat 23946941  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctg 218  Q
    ||||| |||| || ||||||||||| |||||||||||| |||||||||| |||||||| ||||  || || | |||| | ||||| |||||||| |||||    
T  23946940 tagcacccaacttggcaaagaaatccgcacattggttcccctctcttaaagtgtgatggagagttatatttcgaacactaagcaaatcctttatgttctg 23946841  T
Q  219 gatgaggacggcgtaggtgtggtatctcg 247  Q
     ||||||| |||||| ||||| |||||||    
T  23946840 aatgaggaaggcgtatgtgtgatatctcg 23946812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 8639441 - 8639266
Alignment:
Q  14 aaaccgctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatc 113  Q
    |||| ||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || || | ||||||||||||    
T  8639441 aaacagctagcttctaacaaagtaagtgcctatcgcatcagctctaagcagaggaaggaggtcagctggaggcgattgg-tggacgataaaatgagcatc 8639343  T
Q  114 tgaattagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttcc 190  Q
    |||| ||||| |||||||||||||| ||||||||||||| ||| |||||||| | | ||||||||||||||||||||    
T  8639342 tgaactagcacccaatttagcaaagtaatctgcacattgattcccctctcttgaagcgtgatgaagagagatgttcc 8639266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 8684972 - 8684809
Alignment:
Q  20 ctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaatt 119  Q
    |||||| ||||||||  ||||||| ||| ||||||||||||||| |||||||||||||| ||| ||||| ||| || || ||||| |||||||||||| |    
T  8684972 ctagcttctaacaaaataagtgcccatcgcatcagctctaagcataggaaggaggtcagttgggggcgattgg-tggacaacaaactgagcatctgaaat 8684874  T
Q  120 agcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagaga 184  Q
     ||| |||||||||||||  ||  ||||||||| ||  |||||||||||||||||||||||||||    
T  8684873 ggcacccaatttagcaaaataaattgcacattgatttccctctcttaaggtgtgatgaagagaga 8684809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 1297368 - 1297598
Alignment:
Q  14 aaaccgctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatc 113  Q
    |||| ||||||||||||||||  || |||||| | |||||||||||||||  || ||||| ||||||||||||||||| ||| || |||| || | ||||    
T  1297368 aaacagctagctcctaacaaaataaatgcctagcgcatcagctctaagcatggggaggagatcagctggaggcgaatg-atggacgacaagatcaacatc 1297466  T
Q  114 tgaattagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttata 213  Q
    |||||||||| | ||||||||| |||| || |||||||| ||| | |||||||| ||||| || || || ||||||| | || |||||| ||| |  |||    
T  1297467 tgaattagcaccaaatttagcagagaagtccgcacattgattcccttctcttaaagtgtggtggagggaaatgttccgatcatttagcaggtcttcgata 1297566  T
Q  214 ttctggatgaggacggcgtaggtgtggtatct 245  Q
    |||| ||| || ||||||||| ||||||||||    
T  1297567 ttctcgataagaacggcgtagatgtggtatct 1297598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 45210711 - 45210938
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||||||| |||||||||||||| || || ||| || || |||| |||| |||||||||    
T  45210711 gctaactcctaataaagacagtgcctatagcatcagctctaagcagagggaggaggtcagctggcggtgattgg-tggacgacaagatgaacatctgaat 45210809  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctg 218  Q
    ||||| |||| || ||||||||||| |||||||||||| |||||||||| |||||||| |||| ||| || | |||| | ||||| |||||||| |||||    
T  45210810 tagcacccaacttggcaaagaaatccgcacattggttcccctctcttaatgtgtgatggagagtgatatttcgaacactaagcaaatcctttatgttctg 45210909  T
Q  219 gatgaggacggcgtaggtgtggtatctcg 247  Q
     |||||||||||||||||||| |||||||    
T  45210910 aatgaggacggcgtaggtgtgatatctcg 45210938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 37145920 - 37145693
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    |||| ||||||| ||||| |||||||||  ||||| ||||||||||||| |||||||||||||| ||| | ||| || || |||| |||| | |||||||    
T  37145920 gctatctcctaataaagacagtgcctatagcatcatctctaagcagagggaggaggtcagctggcggcaattgg-tggacgacaagatgaacttctgaat 37145822  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctg 218  Q
    ||||| |||| || ||||||||||| |||||||||||| |||||||||| |||||||| |||| ||| || | |||| | ||||| |||||||| |||||    
T  37145821 tagcacccaacttggcaaagaaatccgcacattggttcccctctcttaatgtgtgatggagagtgatatttcgaacactaagcaaatcctttatgttctg 37145722  T
Q  219 gatgaggacggcgtaggtgtggtatctcg 247  Q
     |||||||||||||||||||| |||||||    
T  37145721 aatgaggacggcgtaggtgtgatatctcg 37145693  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 17716244 - 17716414
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    ||||||| ||||||||  ||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||| || || ||||| ||||||||||||     
T  17716244 gctagcttctaacaaaataagtgcctatcgcatcagctctaagcataggaaggaggtcagctgggggcgattgg-tggacaacaaactgagcatctgaaa 17716342  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttcc 190  Q
    | ||| |||||||||||||  ||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  17716343 tggcacccaatttagcaaaataatctgcacattgatttccctctcttaaggtgtgatgaagagagatgttcc 17716414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 19017473 - 19017643
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    ||||||| ||||||||  ||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||| || || ||||| ||||||||||||     
T  19017473 gctagcttctaacaaaataagtgcctatcgcatcagctctaagcataggaaggaggtcagctgggggcgattgg-tggacaacaaactgagcatctgaaa 19017571  T
Q  119 tagcatccaatttagcaaagaaatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttcc 190  Q
    | ||| |||||||||||||  ||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  19017572 tggcacccaatttagcaaaataatctgcacattgatttccctctcttaaggtgtgatgaagagagatgttcc 19017643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 53606210 - 53606414
Alignment:
Q  40 tgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaattagcatccaatttagcaaaga 139  Q
    |||||| | |||||||||||||||  || ||||| |||||||||||||| || ||| || |||| |  |||||||||||||||| | |||||||||||||    
T  53606210 tgcctagcgcatcagctctaagcaaggggaggagatcagctggaggcgattg-atggacgacaagagcagcatctgaattagcaccaaatttagcaaaga 53606308  T
Q  140 aatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtg 239  Q
    | || |||||||| ||| |||||||||| ||||| || || || |||||||   || |||||| ||| || ||||||||||| ||  |||||||| ||||    
T  53606309 agtccgcacattgattcccctctcttaaagtgtggtggagggaaatgttcctgtcatttagcaggtctttgatattctggataagagcggcgtagatgtg 53606408  T
Q  240 gtatct 245  Q
    ||||||    
T  53606409 gtatct 53606414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 53987128 - 53987074
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggag 73  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||||||| |||||    
T  53987128 gctatctcctaataaagacagtgcctatagcatcagctctaagcagagggaggag 53987074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 42604101 - 42604252
Alignment:
Q  14 aaaccgctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatc 113  Q
    |||| ||||||| ||||||||  ||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||| || || ||||| ||||||||    
T  42604101 aaacagctagcttctaacaaaataagtgcctatcgcatcagctctaagcataggaaggaggtcagctgggggcgattgg-tggacaacaaactgagcatc 42604199  T
Q  114 tgaattagcatccaatttagcaaagaaatctgcacattggttctcctctctta 166  Q
    |||| ||||| |||||||||||||| |||| |||||||| ||  |||||||||    
T  42604200 tgaaatagcacccaatttagcaaagtaatccgcacattgatttccctctctta 42604252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 46831664 - 46831460
Alignment:
Q  40 tgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaattagcatccaatttagcaaaga 139  Q
    |||||| | |||||||||||||||  || ||||| |||||||||||||| || ||| || |||| |  |||||||||||||||| | |||||||||||||    
T  46831664 tgcctagcgcatcagctctaagcaaggggaggagatcagctggaggcgattg-atggacgacaagagcagcatctgaattagcaccaaatttagcaaaga 46831566  T
Q  140 aatctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtg 239  Q
    | || |||||||| ||| |||||||||| ||||| || || || |||||||   || |||||| ||| || ||||||||||| ||  |||||||| ||||    
T  46831565 agtccgcacattgattcccctctcttaaagtgtggtggagggaaatgttcctgtcatttagcaggtctttgatattctggataagagcggcgtagatgtg 46831466  T
Q  240 gtatct 245  Q
    ||||||    
T  46831465 gtatct 46831460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 48953801 - 48953573
Alignment:
Q  19 gctagctcctaacaaagaaagtgcctatcacatcagctctaagcagaggaaggaggtcagctggaggcgaatggatgcactacaaaatgagcatctgaat 118  Q
    ||||| ||||||  ||||| |||||||   |||||||||||||||| |||||||| |||| || |||||| || ||| || |||| || ||||||||||     
T  48953801 gctagttcctaatgaagaaggtgcctagagcatcagctctaagcaggggaaggagatcagttgtaggcgattg-atggacgacaagatcagcatctgaaa 48953703  T
Q  119 tagcatccaatttagcaaagaaa-tctgcacattggttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattct 217  Q
    |||| || ||||||||||| ||| | ||||| ||| ||| |||||||||  ||||||||||||||||||||||    |  |||||| ||||| ||||| |    
T  48953702 tagcttcgaatttagcaaaaaaagtttgcacgttgattcccctctcttagagtgtgatgaagagagatgttccggttagctagcaaatccttgatattgt 48953603  T
Q  218 ggatgaggacggcgtaggtgtggtatctcg 247  Q
    |||| || || |||||| |||| |||||||    
T  48953602 ggataagaactgcgtagatgtgatatctcg 48953573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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