View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_low_17 (Length: 266)
Name: NF18263_low_17
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 30616003 - 30616258
Alignment:
| Q |
11 |
cagaacctgtggaacaaataatcataatgtttagagtgattccatagactgttctacggcctagtttgtcaccgagccagccgaagaagagttgtccggt |
110 |
Q |
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| T |
30616003 |
cagaacctagggaacaaataatcataatgtttagagtgattccatagactgttctacggcctagtttgtcaccgagccagccgaagaagagttgtccggt |
30616102 |
T |
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| Q |
111 |
aaatgttccaactaaagcgaggccgttaactgttgctgcaacgtttggtggcaatgttccaggctcttcagctccgtcgacatagtaatatatacgaccg |
210 |
Q |
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| T |
30616103 |
aaatgttccaactaaagcgaggccgttaactgttgctgcaacgtttggtggcaatgttccaggctcttcagctccgtcgacatagtaatatatacgaccg |
30616202 |
T |
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| Q |
211 |
agtaggcttgtaacaagcgatatgcaaaatagatcataggcattggtgaagaagcc |
266 |
Q |
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| T |
30616203 |
agtagccttgtaacaagcgatatgcaaaatagatcatatgcattggtgaagaagcc |
30616258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 30620754 - 30621009
Alignment:
| Q |
11 |
cagaacctgtggaacaaataatcataatgtttagagtgattccatagactgttctacggcctagtttgtcaccgagccagccgaagaagagttgtccggt |
110 |
Q |
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| T |
30620754 |
cagaacctatggaacaaacaaccataacagctagagtcatgccatagacttttttacggcctagtttgtcaccgagccagccgaagaagagttgtccaga |
30620853 |
T |
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| Q |
111 |
aaatgttccaactaaagcgaggccgttaactgttgctgcaacgtttggtggcaatgttccaggctcttcagctccgtcgacatagtaatatatacgaccg |
210 |
Q |
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| T |
30620854 |
aagtgtcccaacaaaagcaacgccattaactgctgctgcaacgtttggtggcaacgatcctggcttttcagctccatcgacatggtagtaaatgcgaccg |
30620953 |
T |
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| Q |
211 |
agtaggcttgtaacaagcgatatgcaaaatagatcataggcattggtgaagaagcc |
266 |
Q |
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| T |
30620954 |
agtagctttgtgacaagggatatgcagaatagatcgtatgcatcggtgaagaagcc |
30621009 |
T |
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