View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_low_27 (Length: 207)
Name: NF18263_low_27
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_low_27 |
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| [»] scaffold1983 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 40721962 - 40721788
Alignment:
| Q |
15 |
cagagaaaatgcataagtttaatgaagaaaaaagagaaaataagtgagagaaaatctctagattcattcaactgaaaataatttgttacaacatagtaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
40721962 |
cagagaaaatgcataagtttaatgaagaaaaaagagaaaataagtgagagaaaatctctagattcattcaactgaaaagaatttgttacaacatagttat |
40721863 |
T |
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| Q |
115 |
atatagctgcatataatcttaactaactgtaactaactattagcaaggattagaatcatatagactacagagtaa |
189 |
Q |
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| T |
40721862 |
atatagctgcatataatcttaactaactgtaactaactattagcaaggattagaatcatatagactatagagtaa |
40721788 |
T |
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Target: scaffold1983 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold1983
Description:
Target: scaffold1983; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 646 - 532
Alignment:
| Q |
59 |
tgagagaaaatctctagattcattcaactgaaaataatttgttacaacatagtaatatatagctgcatataatcttaactaactgtaactaactattagc |
158 |
Q |
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| T |
646 |
tgagagaaaatctattgattcattcaactgaaaagagtttgttacaacatagctatatatagcttcatataatcataactaattgtaactaactattagc |
547 |
T |
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| Q |
159 |
aaggattagaatcat |
173 |
Q |
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|||| ||||||||| |
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| T |
546 |
taggactagaatcat |
532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 30430940 - 30431054
Alignment:
| Q |
60 |
gagagaaaatctctagattcattcaactgaaaataatttgttacaacatagtaatatatagctgcatataatcttaactaactgtaactaactattagca |
159 |
Q |
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| T |
30430940 |
gagataaaatctctagattcattcaactgagatgagtttgttacaacatagctatatatagctgaatttaatcctaactaactgtaactaactattagct |
30431039 |
T |
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| Q |
160 |
aggattagaatcata |
174 |
Q |
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| T |
30431040 |
aggattagaatcata |
30431054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 30718669 - 30718587
Alignment:
| Q |
94 |
aatttgttacaacatag-taatatatagctgcatataatcttaactaactgtaactaactattagcaaggattagaatcatat |
175 |
Q |
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| T |
30718669 |
aattggttacaacaaagctaatataaagctgtatatgatcctaactaactctaacaaactattatctaggattagaatcatat |
30718587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 30682413 - 30682331
Alignment:
| Q |
94 |
aatttgttacaacatag-taatatatagctgcatataatcttaactaactgtaactaactattagcaaggattagaatcatat |
175 |
Q |
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| T |
30682413 |
aattggttacaacaaagctaatataaagctctatatgatcctaactaactctaacaaactattatctaggattagaatcatat |
30682331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 29155973 - 29156078
Alignment:
| Q |
71 |
tctagattcattcaactgaaaataatttgttacaa-catagtaatatatagctgcatataatcttaactaactgtaactaactattagcaaggattagaa |
169 |
Q |
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|||||||||||| || ||||| | |||||||||| ||||| ||||||||||| |||||||| ||| ||| | ||||||||| ||| | |||||||||| |
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| T |
29155973 |
tctagattcattgaattgaaatgagtttgttacaatcatagctatatatagctgtatataatcctaagtaagtctaactaactcttatctaggattagaa |
29156072 |
T |
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| Q |
170 |
tcatat |
175 |
Q |
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|||||| |
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| T |
29156073 |
tcatat |
29156078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 6415383 - 6415465
Alignment:
| Q |
60 |
gagagaaaatctctagattcattcaactgaaaataatttgttacaacatagtaatatatagctgcatataatcttaactaact |
142 |
Q |
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||||||||||||||||||| ||| || ||| | | ||||||| ||||||| ||||||||||| |||||||| ||||||||| |
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| T |
6415383 |
gagagaaaatctctagatttattgaattgatatgagtttgttaaaacatagctatatatagctgtatataatcctaactaact |
6415465 |
T |
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