View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18263_low_4 (Length: 526)
Name: NF18263_low_4
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 23323029 - 23323417
Alignment:
| Q |
11 |
gcagcatcagagaacatttcaataaacattaagccgattcttgattcacactaaatcttatatgaaaataactatgctagcaaaaaacaaatttctatac |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23323029 |
gcagcatcagaaaacatttcaataaacatgaagccgattcttgattcacacaaaatcttatatgaaaataactatgctagcaaaaaacaaatttctatac |
23323128 |
T |
|
| Q |
111 |
acggttggagataatattaaggatgctccattgtattagttgacaacttgccatgtcttgtcttcgttattaactattgaatgtttaaaaatttagatta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
23323129 |
acggttggagataatattaaggatgctccattgtattagttgacaacttgccatgtcttgtcttcggtattaactattgaatgtttaaaaattaagatta |
23323228 |
T |
|
| Q |
211 |
gattctggttacactcaaaagtgtnnnnnnnnnnnnnnnnnnnnncacaaaagtatatataaatccctacctgtttgaaccaaacaaacttcaaggtatc |
310 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23323229 |
gattctggttacattcaaaagtgt-aaaaaaaaagaaaaaaaaaacacaaaagtatatataaatcactacctgtttgaaccaaacaaacttcaaggtatc |
23323327 |
T |
|
| Q |
311 |
aaattcgattcctactgataaaatagtcacggataatcaaagttgaattttcatcgaagagatgaaaattagatttcgcgacataaattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23323328 |
aaattcgattcctactgataaaatagtcacggataatcaaagttgaattttcatcgaagagatgaaaattagatttagcgacataaattt |
23323417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 418 - 511
Target Start/End: Original strand, 23323443 - 23323536
Alignment:
| Q |
418 |
cttgcaagatcaaagatatatctcaacattttcaacaataataaccaaaaggagtgtatgccaatccattccatttacaccaattgcagtaact |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23323443 |
cttgcaagatcaaagatatatctcaacattttcaaccataataaccaaaaggagtgtatgccaatccattccatttacaccaattgcagtaact |
23323536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University