View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18263_low_6 (Length: 452)
Name: NF18263_low_6
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 7089034 - 7088611
Alignment:
| Q |
19 |
ttctgatctcatttaccaatttcctaacttgttttgcaaacaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgttcaaatcaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089034 |
ttctgatctcatttaccaatttcctaacttgttttgcaaacaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgttcaaatcaga |
7088935 |
T |
|
| Q |
119 |
cctccaagacccttcatcttacctttcttcatggaatgaagatgatatcaatccatgttcatggcaatatgtgaaatgcaatccacaaactcaaagagtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7088934 |
cctccaagacccttcatcttacctttcttcatggaatgaagatgatatcaatccatgttcatggcaatatgtgaaatgcaatccacaaactcaaagagtc |
7088835 |
T |
|
| Q |
219 |
tcagaactttccttagatggtttaggcttatcaggtaaattaggaagaagtcttgaaaaattgcaacatttagtaacattatcactttcacacaacaatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7088834 |
tcagaactttccttagatggtttaggcttatcaggtaaattaggaagaagtcttgaaaaattgcaacatttagtaacattatcactttcacacaacaatt |
7088735 |
T |
|
| Q |
319 |
tcagtggaactattagtccttcacttacactttccaacactcttcaaaaactaaaccttagtcacaactcattttctggtccattacctctttcttttgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7088734 |
tcagtggaactattagtccttcacttacactttccaacactcttcaaaaactaaaccttagtcacaactcattttctggtccattacctctttcttttgt |
7088635 |
T |
|
| Q |
419 |
caacattagttcaataaggttcat |
442 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
7088634 |
caacatgagttcaataaggttcat |
7088611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 7076191 - 7076091
Alignment:
| Q |
38 |
tttcctaacttgttttgcaaacaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgttcaaatcagacctccaagacccttcatct |
137 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
7076191 |
tttcctaacttgttttgcaaacaaggacgtaaccattcagttaaacgacgacgtcctcggcttaattgtgttcaaatcagaccttcataaccctttatct |
7076092 |
T |
|
| Q |
138 |
t |
138 |
Q |
| |
|
| |
|
|
| T |
7076091 |
t |
7076091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University