View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_low_8 (Length: 404)
Name: NF18263_low_8
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 8074566 - 8074291
Alignment:
| Q |
17 |
caaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8074566 |
caaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaaag |
8074467 |
T |
|
| Q |
117 |
tctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttaccacccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8074466 |
tctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttatcacccaa |
8074367 |
T |
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| Q |
217 |
atcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatgtttcgcaggaacaaaatca |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8074366 |
atcactcaccttaatccacatcattgtatcgaaatccatctcgtagatatttaaatgtttcgcaggaacaaaatca |
8074291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 289 - 388
Target Start/End: Complemental strand, 8073876 - 8073777
Alignment:
| Q |
289 |
atcatgtatcctccagtgcacccaacaaaggatttgttagaagtattatccaattcaaacatagtattcttaccacgagacatgtcacacaaatagtata |
388 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8073876 |
atcatgtatcctccggtgcacccaacaaaggatttgttagaagtattatccaattcaaacgtagtattcttaccacgagacatgtcacacaaatagtata |
8073777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 40954430 - 40954703
Alignment:
| Q |
17 |
caaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaaag |
116 |
Q |
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||||||||||| ||||| |||||||| |||||||||| | || ||||||||||||||||||| ||||| || |||||||| ||||| |||||||||| |
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| T |
40954430 |
caaccaagtgaggaaacatgatcaccgaattttcccacaattgggatcatgtgtattagctttgcctccatcgaataaatgcaacacctcgcaggaaaag |
40954529 |
T |
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| Q |
117 |
tctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttaccacccaa |
216 |
Q |
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||| ||||||||||||| | |||| |||||| | ||||||||| ||||||||| | |||||||||||||| |||||||||| ||||||||| |||| || |
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| T |
40954530 |
tcttgagataatacaca--actgctaagatgtacgcatttacccagtcttctcacatcacaatgacccttaactcctaagaataatgctttatcacctaa |
40954627 |
T |
|
| Q |
217 |
atcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatgtttcgcaggaacaaaatca |
292 |
Q |
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||| | ||||||||||||| ||||||||||||||| |||| ||||||||||||||| || ||||||||||||||| |
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| T |
40954628 |
atcgcccaccttaatccacctcattgtatcgaaattcatcatgtagatattcaaatgctttgcaggaacaaaatca |
40954703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 40955453 - 40955197
Alignment:
| Q |
17 |
caaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaaag |
116 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| |||| | || |||||||||||||||||| ||||| | |||||||| ||||| |||||||||| |
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| T |
40955453 |
caaccaagtgaggaaacctgatcaccggatttttccacaattgggatcatgtgtattagcttttcctccatcaaataaatgcaacacctcgcaggaaaag |
40955354 |
T |
|
| Q |
117 |
tctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttaccacccaa |
216 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||| ||||| |||| | |
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| T |
40955353 |
tctcgagataatacacaaaattgctaagatgtccccatttacccagtcttctcacatcacaatgacccttacctcctaagaataattctttatcacctag |
40955254 |
T |
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| Q |
217 |
atcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatg |
273 |
Q |
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||| | ||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
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| T |
40955253 |
atcgcccaccttaatccacctcattgtatcgaaatttatctcgtagattttcaaatg |
40955197 |
T |
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