View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18264_low_1 (Length: 552)
Name: NF18264_low_1
Description: NF18264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18264_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Complemental strand, 42899533 - 42899010
Alignment:
| Q |
18 |
gatttgaatgaagaatatttccagcaaaagtatcctcaaaagaagttccatgaaatccagaagaagagaaagagttgtttatcatttggtcttcacatga |
117 |
Q |
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| T |
42899533 |
gatttgaatgaagaatatttccagcaaaagtatcctcaaaagaagttccatgaaatccagaagaagagaaagagttgtttatcatttggtcttcacatga |
42899434 |
T |
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| Q |
118 |
ggacaaattcaaactaaaattaccatttgagtttatcatgttgttggtggcagagtcaacaatagacacgtgaccctgttggtgggtcccactcatcatg |
217 |
Q |
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| T |
42899433 |
ggacaaattcaaactaaaattaccatttgagtttatcatgttgttggtggcagagtcaacaatagacacgtgaccctgttggtgggtcccactcatcatg |
42899334 |
T |
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| Q |
218 |
gactgtgatgagcatgagctggttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtagg |
317 |
Q |
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| T |
42899333 |
gactgtgatgagcatgagctggttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtagg |
42899234 |
T |
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| Q |
318 |
atggaagtgtaggagtaggaccatttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatga |
417 |
Q |
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| T |
42899233 |
atggaagtgtagaagtaggaccatttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatga |
42899134 |
T |
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| Q |
418 |
ttgacaaagccaagagggtatttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgtgtt |
517 |
Q |
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| T |
42899133 |
ttgacaaagccaagagggtatttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgagtt |
42899034 |
T |
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| Q |
518 |
tggagattgttcatgttgtgatga |
541 |
Q |
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| T |
42899033 |
tggagattgttcatgttgtgatga |
42899010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 5787617 - 5787666
Alignment:
| Q |
239 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtg |
288 |
Q |
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| T |
5787617 |
gttgcacccatttgagctgctttctgcaacaatgcagtagctgacatgtg |
5787666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 36990900 - 36990837
Alignment:
| Q |
239 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcag |
302 |
Q |
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| T |
36990900 |
gttgcacccatttgagcagctttttgtagcaatgcagtggctgacatgtgaggtgaagttgcag |
36990837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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