View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18264_low_10 (Length: 249)

Name: NF18264_low_10
Description: NF18264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18264_low_10
NF18264_low_10
[»] chr3 (13 HSPs)
chr3 (1-239)||(44661901-44662143)
chr3 (142-227)||(17144595-17144680)
chr3 (33-188)||(38651902-38652059)
chr3 (78-219)||(22472960-22473104)
chr3 (141-199)||(25465928-25465986)
chr3 (141-199)||(44651086-44651144)
chr3 (141-230)||(2832256-2832345)
chr3 (146-199)||(26758356-26758409)
chr3 (75-199)||(4554752-4554876)
chr3 (141-199)||(8557851-8557909)
chr3 (142-200)||(25858317-25858374)
chr3 (141-199)||(38680934-38680992)
chr3 (142-195)||(27054202-27054255)
[»] chr1 (18 HSPs)
chr1 (44-228)||(10847400-10847586)
chr1 (78-199)||(32910266-32910387)
chr1 (141-218)||(15880029-15880106)
chr1 (77-199)||(35980175-35980297)
chr1 (75-231)||(8268702-8268858)
chr1 (141-207)||(36797926-36797993)
chr1 (141-199)||(6694270-6694328)
chr1 (141-199)||(19051234-19051292)
chr1 (141-199)||(26344950-26345008)
chr1 (141-221)||(15882029-15882109)
chr1 (75-199)||(35992498-35992622)
chr1 (141-199)||(17989179-17989237)
chr1 (141-231)||(39158189-39158279)
chr1 (159-231)||(16537705-16537777)
chr1 (148-200)||(32937980-32938032)
chr1 (75-229)||(36203304-36203459)
chr1 (141-199)||(12973691-12973749)
chr1 (141-199)||(40095313-40095371)
[»] chr2 (8 HSPs)
chr2 (85-221)||(17762813-17762950)
chr2 (75-217)||(1331066-1331207)
chr2 (75-221)||(28790567-28790713)
chr2 (75-131)||(15320549-15320605)
chr2 (145-199)||(24725698-24725752)
chr2 (141-231)||(30759503-30759593)
chr2 (146-231)||(30761618-30761703)
chr2 (146-199)||(44085615-44085668)
[»] chr7 (19 HSPs)
chr7 (34-199)||(8118183-8118349)
chr7 (141-231)||(23032806-23032896)
chr7 (141-230)||(47483744-47483833)
chr7 (141-199)||(6879998-6880056)
chr7 (141-230)||(26524807-26524896)
chr7 (141-222)||(43202558-43202639)
chr7 (160-220)||(20306748-20306808)
chr7 (160-231)||(2734479-2734550)
chr7 (141-200)||(40848983-40849042)
chr7 (141-231)||(26214972-26215062)
chr7 (142-198)||(7697412-7697468)
chr7 (75-231)||(11399185-11399339)
chr7 (141-231)||(21237644-21237735)
chr7 (141-199)||(11834366-11834424)
chr7 (141-199)||(30079486-30079544)
chr7 (141-199)||(31287667-31287725)
chr7 (141-199)||(35819974-35820032)
chr7 (141-199)||(37375450-37375508)
chr7 (141-190)||(31012966-31013014)
[»] chr6 (10 HSPs)
chr6 (79-199)||(892233-892352)
chr6 (146-218)||(13859264-13859336)
chr6 (141-199)||(11417192-11417250)
chr6 (34-230)||(8064509-8064702)
chr6 (141-200)||(20500683-20500742)
chr6 (142-199)||(7169984-7170041)
chr6 (142-231)||(7676216-7676305)
chr6 (74-132)||(14940542-14940599)
chr6 (141-207)||(19134997-19135063)
chr6 (141-190)||(12108469-12108518)
[»] chr8 (12 HSPs)
chr8 (141-221)||(3129440-3129520)
chr8 (141-199)||(11017134-11017192)
chr8 (141-199)||(37162550-37162608)
chr8 (141-200)||(12912616-12912675)
chr8 (141-207)||(38926320-38926386)
chr8 (164-231)||(44336916-44336983)
chr8 (141-203)||(19539519-19539581)
chr8 (141-199)||(36340648-36340706)
chr8 (162-199)||(12193364-12193401)
chr8 (162-199)||(12437792-12437829)
chr8 (141-221)||(12074064-12074144)
chr8 (146-190)||(18755237-18755281)
[»] chr5 (22 HSPs)
chr5 (160-231)||(6718734-6718805)
chr5 (141-221)||(12263989-12264068)
chr5 (141-199)||(691454-691513)
chr5 (75-199)||(27571938-27572061)
chr5 (141-195)||(6633446-6633500)
chr5 (141-199)||(11402721-11402779)
chr5 (141-199)||(25495213-25495271)
chr5 (141-199)||(33792795-33792853)
chr5 (162-231)||(6894280-6894349)
chr5 (141-218)||(26007251-26007328)
chr5 (146-206)||(563797-563857)
chr5 (142-190)||(10090376-10090424)
chr5 (75-199)||(14652514-14652639)
chr5 (175-230)||(20191811-20191866)
chr5 (141-199)||(7591458-7591515)
chr5 (141-199)||(41454996-41455054)
chr5 (141-230)||(18845640-18845729)
chr5 (146-195)||(36567843-36567892)
chr5 (143-199)||(17131978-17132034)
chr5 (141-217)||(22553493-22553569)
chr5 (159-199)||(26690008-26690048)
chr5 (159-199)||(26959740-26959780)
[»] chr4 (15 HSPs)
chr4 (160-230)||(18881911-18881981)
chr4 (75-190)||(48602431-48602545)
chr4 (75-199)||(23120148-23120273)
chr4 (141-199)||(8484795-8484854)
chr4 (141-207)||(4688803-4688869)
chr4 (141-199)||(8312015-8312073)
chr4 (175-221)||(40494579-40494625)
chr4 (141-199)||(42198910-42198968)
chr4 (142-199)||(23625801-23625858)
chr4 (75-199)||(15723948-15724073)
chr4 (141-221)||(51907194-51907274)
chr4 (141-231)||(17845014-17845104)
chr4 (141-199)||(21069178-21069236)
chr4 (141-231)||(48338468-48338556)
chr4 (146-195)||(49640973-49641022)
[»] scaffold0688 (2 HSPs)
scaffold0688 (141-230)||(1290-1378)
scaffold0688 (141-230)||(7859-7947)
[»] scaffold0204 (1 HSPs)
scaffold0204 (141-231)||(25990-26078)
[»] scaffold0015 (1 HSPs)
scaffold0015 (141-199)||(62536-62594)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44661901 - 44662143
Alignment:
Q  1 ctataagttatccgaactgcatgatnnnnnnntatgtggtttagtttgtttcgtttgacattcaaaataatat--gaaccaaacaaatgtg--gtttgtg 96  Q
    |||||||||||||||||||||||||       ||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||    
T  44661901 ctataagttatccgaactgcatgataaaaaaatatgtagtttggtttgtttcgtttgacattcaaaataatatatgaaccaaacaaatgtgtggtttgtg 44662000  T
Q  97 ttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatg 196  Q
    ||||||||||||||||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44662001 ttggattggtcggtgcggttttttccgagtcaataaatttttttgttttcaacattaaaagaaagttaaaaagttaatacacagcatattttcagcaatg 44662100  T
Q  197 tttccaacaataatttaaatttcatttaacattacggtttctt 239  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  44662101 tttccaacaataatttaaatttcatttaacattacagtttctt 44662143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 17144680 - 17144595
Alignment:
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaaca 227  Q
    |||||||||| ||||  ||||||||||  ||| |||||||||||||||||| ||||||||||||||  ||||||||||||| ||||    
T  17144680 ttttcaacatcaaaatcaagttaaaaaactaaaacacaacatattttcagccatgtttccaacaatgttttaaatttcattcaaca 17144595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 38652059 - 38651902
Alignment:
Q  33 tatgtggtttagtttgtttcgtttgacattcaaaataatatg--aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaat 130  Q
    |||| ||||| ||||| |||| ||||| || ||||||||||   |||||||| |||| |||||| ||||||| ||| | ||||||||||||||||||| |    
T  38652059 tatgcggtttggtttggttcggttgactttaaaaataatatccaaaccaaactaatgcggtttgggttggatcggttgatgcggttttttccgagacatt 38651960  T
Q  131 aaannnnnnngttttcaacattaaaagaaagttaaaaagttaatacacaacatatttt 188  Q
    ||        |||| |||| ||||||  | ||||||||||||| ||||||||||||||    
T  38651959 aattttttttgtttccaacgttaaaatcaggttaaaaagttaaaacacaacatatttt 38651902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 22473104 - 22472960
Alignment:
Q  78 caaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaa---aaagttaat 174  Q
    ||||| ||||| ||||||||||||| ||| ||||| ||||||  |||||||||| |       |||||||| || ||||  |||||||   ||| ||||     
T  22473104 caaaccaatgtagtttgtgttggatcggttggtgcagtttttctcgagacaatacaattttttgttttcaatatcaaaatcaagttaataaaaatttaaa 22473005  T
Q  175 acacaacatattttcagcaatgtttccaacaataatttaaatttc 219  Q
    |||||||||||||||| ||||| ||||||||||  ||||||||||    
T  22473004 acacaacatattttcaacaatgcttccaacaatgttttaaatttc 22472960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 25465928 - 25465986
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||||||  ||||||||| | ||| |||||||||||||||| ||||||||    
T  25465928 gttttcaacattaaaatcaagttaaaaggctaaaacacaacatattttcaacaatgttt 25465986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 44651086 - 44651144
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  ||||||||||||| | ||||| |||||||||||||||||||    
T  44651086 gtttccaacattaaaatcaagttaaaaagttgaaacacagcatattttcagcaatgttt 44651144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 2832345 - 2832256
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    ||||||||||||||||   |||| ||||| ||| ||||||| ||||| ||  |||||||||||||||  ||| |||||||||| ||||||    
T  2832345 gttttcaacattaaaatcgagtttaaaaggtaaaacacaacgtatttccattaatgtttccaacaatgtttttaatttcatttcacatta 2832256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 26758356 - 26758409
Alignment:
Q  146 caacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||||||  || |||||||| ||| |||||||||||||||||||||||||    
T  26758356 caacattaaaattaaattaaaaagctaaaacacaacatattttcagcaatgttt 26758409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 4554752 - 4554876
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| |||| |||||| ||||||| ||| | |||||||||||   |||| |||||       |||| |||||||||||  | |||||||||||||     
T  4554752 aaccaaactaatgcggtttgagttggatcggttgatgcggtttttttt-agacgataaatttttttgtttgcaacattaaaattaggttaaaaagttaaa 4554850  T
Q  175 acacaacata-ttttcagcaatgttt 199  Q
    |||||||||| |||||||||||||||    
T  4554851 acacaacatatttttcagcaatgttt 4554876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 8557909 - 8557851
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  ||||||||||| | | ||||||||||||||| |||||||||    
T  8557909 gtttccaacattaaaatcaagttaaaaagcttaaacacaacatattttctgcaatgttt 8557851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 25858317 - 25858374
Alignment:
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttc 200  Q
    |||||||||||||||  ||||||||||||||| | ||||| |||||||| |||||||||    
T  25858317 ttttcaacattaaaatcaagttaaaaagttaa-aaacaacttattttcaacaatgtttc 25858374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 38680934 - 38680992
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| ||| |||||||  ||||||||||||||| ||||||||||||| || ||||||||    
T  38680934 gtttccaatattaaaattaagttaaaaagttaaaacacaacatatttccaacaatgttt 38680992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 27054202 - 27054255
Alignment:
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaat 195  Q
    |||||||| ||||||  || |||||||||||| ||||||||||||||| |||||    
T  27054202 ttttcaacgttaaaatcaaattaaaaagttaaaacacaacatattttctgcaat 27054255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 10847586 - 10847400
Alignment:
Q  44 gtttgtttcgtttgacattcaaaataatat--gaaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnng 141  Q
    ||||| |||| ||||| || ||||||| ||  ||||||||| ||||||||||| ||||||||||| | ||| ||||| | | |||||||| |       |    
T  10847586 gtttggttcggttgactttgaaaataaaatcagaaccaaaccaatgtggtttgggttggattggttgatgcagttttctgctagacaatacaattttttg 10847487  T
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacat 228  Q
    ||| ||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||| |||||  ||| ||||||||| |||||    
T  10847486 tttccaacattaaaacaaaattaaaaagttaaaacacaacatattttcaacaatgtttccgacaatgtttttaatttcattcaacat 10847400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 32910387 - 32910266
Alignment:
Q  78 caaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaataca 177  Q
    |||||||||| |||||||||||||| ||| |||| | |||||| |||||| ||| |       |||| |||||||||||  ||||||||||||| | |||    
T  32910387 caaacaaatgcggtttgtgttggatcggttggtgtgatttttttcgagacgatacaattttttgtttccaacattaaaatcaagttaaaaagtttaaaca 32910288  T
Q  178 caacatattttcagcaatgttt 199  Q
    ||||||||||||| ||||||||    
T  32910287 caacatattttcaacaatgttt 32910266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 15880106 - 15880029
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaattt 218  Q
    |||| |||||||||||  ||||||||||| |||  ||||||||||||||||||||||||| ||||||  |||||||||    
T  15880106 gtttccaacattaaaatcaagttaaaaaggtaaatcacaacatattttcagcaatgtttctaacaatgttttaaattt 15880029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 35980297 - 35980175
Alignment:
Q  77 ccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaatac 176  Q
    |||||| |||||||||||  || ||| ||| ||||||||||||| |||||||||| |       |||| |||||||||||  ||||||||||| ||| |     
T  35980297 ccaaaccaatgtggtttggtttagatcggttggtgcggtttttttcgagacaatacaattttttgtttccaacattaaaatcaagttaaaaaggtaaaaa 35980198  T
Q  177 acaacatattttcagcaatgttt 199  Q
    || ||||||||||||||||||||    
T  35980197 acgacatattttcagcaatgttt 35980175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 8268702 - 8268858
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| |||  |||||| ||||||| ||| |||||||||| || | |||||||  |       |||| |||||||||||  ||||||||||| |||     
T  8268702 aaccaaactaatacggtttgggttggatcggttggtgcggtttcttaccagacaatgcaattttttgtttacaacattaaaatcaagttaaaaagctaaa 8268801  T
Q  175 acacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    ||||||||||||| ||| ||||||||| |||||  ||| ||||||||  ||||||||    
T  8268802 acacaacatatttccagtaatgtttccgacaatgtttttaatttcatccaacattac 8268858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 36797993 - 36797926
Alignment:
Q  141 gttttcaacattaaaagaaagttaa-aaagttaatacacaacatattttcagcaatgtttccaacaat 207  Q
    ||||| ||||||||||  ||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  36797993 gtttttaacattaaaatcaagttaacaaagttaaaacacaatatattttcagcaatgtttccaacaat 36797926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 6694328 - 6694270
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  || |||||||||||| |||||||||||||||||||||||||    
T  6694328 gtttccaacattaaaatcaaattaaaaagttaaaacacaacatattttcagcaatgttt 6694270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 19051234 - 19051292
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||||  |||||||    
T  19051234 gttttcaacattaaaatcaagttaaaaagttaaaacacaacatattttcactaatgttt 19051292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 26345008 - 26344950
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  || |||||||||||| |||||||||||||||||||||||||    
T  26345008 gtttccaacattaaaatcaaattaaaaagttaaaacacaacatattttcagcaatgttt 26344950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 15882109 - 15882029
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcat 221  Q
    |||||||||||| |||  || |||||||| ||| |||||||||||||||| |||||| |||| ||||  ||||||||||||    
T  15882109 gttttcaacatttaaatcaaattaaaaagataaaacacaacatattttcaacaatgtctccagcaatgttttaaatttcat 15882029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 35992622 - 35992498
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| |||| ||||||  |||||| ||| ||||||||||||| |||||||||| |       | || |||||||||||  ||||||||||| |||     
T  35992622 aaccaaactaatgcggtttggtttggatcggttggtgcggtttttttcgagacaatacaattttttgcttccaacattaaaatcaagttaaaaaggtaaa 35992523  T
Q  175 acacaacatattttcagcaatgttt 199  Q
    |||  ||||||||||| ||||||||    
T  35992522 acaagacatattttcaacaatgttt 35992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 17989179 - 17989237
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||||||   |||||||||| ||| |||||||||||||||| ||||||||    
T  17989179 gttttcaacattaaaatggagttaaaaaggtaaaacacaacatattttcaacaatgttt 17989237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 39158279 - 39158189
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||||| || ||||||  ||||||||||| ||  |||||||||||||||||| |||||| |||| ||  ||||||| ||||| ||||||||    
T  39158279 gttttcgacgttaaaatcaagttaaaaagctagaacacaacatattttcagctatgttttcaacgatgttttaaatgtcattcaacattac 39158189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 16537777 - 16537705
Alignment:
Q  159 aagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    ||||||||||  ||| |||||||||||||  ||||||||||||||||||| ||||| ||| || | |||||||    
T  16537777 aagttaaaaacctaaaacacaacatatttcaagcaatgtttccaacaatattttaagttttatctgacattac 16537705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 32938032 - 32937980
Alignment:
Q  148 acattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttc 200  Q
    |||||||||  ||||||||||| ||| |||||||||||||| |||||||||||    
T  32938032 acattaaaatcaagttaaaaagctaaaacacaacatattttaagcaatgtttc 32937980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 36203459 - 36203304
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttc-cgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaa-gtta 172  Q
    |||||||| |||| |||||| ||||||||||| ||||| |||||||  |||||||||  |       |||| ||||||||||   | |||||||| || |    
T  36203459 aaccaaactaatgcggtttgggttggattggttggtgcagttttttttcgagacaatggaattttttgtttccaacattaaatcga-gttaaaaacgtaa 36203361  T
Q  173 atacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatt 229  Q
    | ||||||||||||||||| ||| ||||| |||||| ||| |||||||||| |||||    
T  36203360 aaacacaacatattttcagtaatatttccgacaatatttttaatttcatttcacatt 36203304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 12973691 - 12973749
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  || |||||||||||| || ||||||||||| ||||||||||    
T  12973691 gtttacaacattaaaatcaaattaaaaagttaaaacgcaacatatttttagcaatgttt 12973749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 40095371 - 40095313
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||||||  || |||||||| ||| || ||||||||||||| ||||||||    
T  40095371 gttttcaacattaaaattaaattaaaaagctaaaacgcaacatattttcaacaatgttt 40095313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 17762813 - 17762950
Alignment:
Q  85 atgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaa-agttaaaaagttaatacacaacat 183  Q
    ||||||||||  |||||||||| ||||||||||||| |||||||||| |       |||| |||||||||||    |||||||||| ||  || ||||||    
T  17762813 atgtggtttggattggattggttggtgcggtttttttcgagacaatacaattttttgtttccaacattaaaatttgagttaaaaagctataacgcaacat 17762912  T
Q  184 attttcagcaatgtttccaacaataatttaaatttcat 221  Q
    |||||||||||||||||| |||||  ||||||||||||    
T  17762913 attttcagcaatgtttccgacaatgttttaaatttcat 17762950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 1331066 - 1331207
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| ||||||||||| |||||||  || ||||||||||||| |||||||||| |       |||| |||||||||||   |||| ||||| |||     
T  1331066 aaccaaaccaatgtggtttgggttggatcagttggtgcggtttttttcgagacaatacaattttttgtttccaacattaaaatcgagtt-aaaaggtaaa 1331164  T
Q  175 acacaacatattttcagcaatgtttccaacaataatttaaatt 217  Q
    ||||||||||||||||||||| ||| | |||||| ||| ||||    
T  1331165 acacaacatattttcagcaatattttcgacaatatttttaatt 1331207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 28790567 - 28790713
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| ||||||||||| || |||| ||| ||||||||||||||||||| |||| |       |||| |||||||||||   |||||||||| ||      
T  28790567 aaccaaaccaatgtggtttgggtcggatcggttggtgcggttttttccgagataatacaattttttgtttccaacattaaaatcgagttaaaaagctata 28790666  T
Q  175 acacaacatattttcagcaatgtttccaacaataatttaaatttcat 221  Q
    ||||||||||||| || |||||||    |||||| ||||||||||||    
T  28790667 acacaacatatttccaacaatgttcttgacaatattttaaatttcat 28790713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 15320605 - 15320549
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaata 131  Q
    |||||||| |||||||||||| |||||||||| | ||||||||||| ||||||||||    
T  15320605 aaccaaactaatgtggtttgttttggattggttgatgcggtttttttcgagacaata 15320549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 24725752 - 24725698
Alignment:
Q  145 tcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||  ||||||||||||||| | ||||||||||| |||||||||||    
T  24725752 tcaacattaaaatcaagttaaaaagttaaaagacaacatatttccagcaatgttt 24725698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 30759593 - 30759503
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||| |||||||||||   |||||||||||||  |||||||| |||| || |||||||| | |||||| ||||||||||||  ||||||||    
T  30759593 gtttccaacattaaaactgagttaaaaagttataacacaacacatttccaacaatgttttcgacaatattttaaatttcatccaacattac 30759503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 30761703 - 30761618
Alignment:
Q  146 caacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||||||||||   |||||||||||||  ||| ||||||||| || ||||||||   |||||| ||||||||||||  ||||||||    
T  30761703 caacattaaaatcgagttaaaaagttataacataacatatttccaacaatgttttagacaatattttaaatttcatccaacattac 30761618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 44085615 - 44085668
Alignment:
Q  146 caacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||||||  |||||||||||   | |||||||||||||||||||||||||    
T  44085615 caacattaaaatcaagttaaaaagccgaaacacaacatattttcagcaatgttt 44085668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 8118349 - 8118183
Alignment:
Q  34 atgtggtttagtttgtttcgtttgacattcaaaataatat--gaaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaata 131  Q
    ||||||||| ||||| |||| ||||  || ||||||| ||  ||||||||| ||||| ||||| ||||||| |||  ||||||||| ||| ||||| |||    
T  8118349 atgtggtttggtttggttcggttgattttaaaaataaaatctgaaccaaaccaatgttgtttgggttggatcggttagtgcggtttgttc-gagacgata 8118251  T
Q  132 aannnnnnngttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
     |       ||||||||||||||||  ||||||||||| | | |||||||||||||||||||||||||    
T  8118250 taattttttgttttcaacattaaaatcaagttaaaaagctgaaacacaacatattttcagcaatgttt 8118183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 23032806 - 23032896
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    ||||||||||| ||||   |||||||||| ||| ||||||||||||| |||||||  |||| |||||| ||| ||||||||||||||||||    
T  23032806 gttttcaacatgaaaattcagttaaaaaggtaaaacacaacatatttccagcaatacttccgacaatatttttaatttcatttaacattac 23032896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 47483744 - 47483833
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    ||||||||||||||||   ||||||||| ||  |||||||||||||| || | ||||||||||||||| ||||||||||||  |||||||    
T  47483744 gttttcaacattaaaatcgagttaaaaaattgttacacaacatatttccaaccatgtttccaacaatattttaaatttcatccaacatta 47483833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 6880056 - 6879998
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||| ||||||  ||||||||||||||| |||||||||||||||| ||||||||    
T  6880056 gttttcaaccttaaaatcaagttaaaaagttaaaacacaacatattttcaacaatgttt 6879998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 26524896 - 26524807
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    |||| ||||||||||| |||||||||||| ||| |||||||||||||  |||||||||| | |||||  ||| ||||||||  |||||||    
T  26524896 gtttccaacattaaaataaagttaaaaagctaaaacacaacatatttctagcaatgttttcgacaatgtttttaatttcatccaacatta 26524807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 43202558 - 43202639
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatt 222  Q
    |||| |||||||||||  ||||||||||  ||| |||||||||||||||| ||| |||||| |||||| ||| |||||||||    
T  43202558 gtttccaacattaaaattaagttaaaaaagtaaaacacaacatattttcatcaacgtttcccacaatatttttaatttcatt 43202639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 20306748 - 20306808
Alignment:
Q  160 agttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttca 220  Q
    ||||||||||| || |||||||||||||||| |||||||| |||||||| ||| |||||||    
T  20306748 agttaaaaagtaaaaacacaacatattttcaacaatgttttcaacaatatttttaatttca 20306808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 2734479 - 2734550
Alignment:
Q  160 agttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||||||| | ||| |||||||||||||||| |||||||||| |||||  ||||||||||||  ||||||||    
T  2734479 agttaaaatgataaaacacaacatattttcaacaatgtttccgacaatgctttaaatttcatccaacattac 2734550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 40848983 - 40849042
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttc 200  Q
    ||||||||||||||||   |||||||||| ||| ||||||||||||| ||||||||||||    
T  40848983 gttttcaacattaaaatcgagttaaaaagataaaacacaacatatttccagcaatgtttc 40849042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 26215062 - 26214972
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||| |||||||||||  || |||||||| ||| ||||||||||||| || |||||||||| |||||  ||| |||||||||  |||||||    
T  26215062 gtttccaacattaaaatcaaattaaaaaggtaaaacacaacatatttccatcaatgtttccgacaatgtttttaatttcattcgacattac 26214972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 7697412 - 7697468
Alignment:
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtt 198  Q
    |||||||||||||||  || ||| |||| ||| ||||||||||||||||||||||||    
T  7697412 ttttcaacattaaaatcaaattataaagataaaacacaacatattttcagcaatgtt 7697468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 11399185 - 11399339
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    ||||||||||||| |||||| ||||||| ||| |||||||||||||  ||||||| | |        ||||||| |||| ||   |||||||||| |||     
T  11399185 aaccaaacaaatgcggtttgggttggatcggttggtgcggtttttt-tgagacaacacaattttttattttcaaaattataatcgagttaaaaaggtaaa 11399283  T
Q  175 acacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||||||||||||| ||||| | |||| |||||  |||||||||||||  |||||||    
T  11399284 acacaacatattttgagcaa-ggttccgacaatgttttaaatttcattccacattac 11399339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 21237735 - 21237644
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaata-cacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    ||||||||||||||||  ||||||||||  | | | |||||||||||||||||||||||| | |||||  ||| ||||||||  ||||||||    
T  21237735 gttttcaacattaaaatcaagttaaaaaaattagagcacaacatattttcagcaatgttttcgacaatgtttttaatttcatccaacattac 21237644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 11834424 - 11834366
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||| ||||||  || |||||||| ||| |||||||||||||||| ||||||||    
T  11834424 gttttcaacgttaaaatcaaattaaaaagctaaaacacaacatattttcaacaatgttt 11834366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 30079544 - 30079486
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  || |||||||| ||| |||||| ||||||||||||||||||    
T  30079544 gtttccaacattaaaatcaacttaaaaagctaaaacacaatatattttcagcaatgttt 30079486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 31287725 - 31287667
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  || ||||||||||||  ||||||||||||||||||| ||||    
T  31287725 gtttccaacattaaaatcaaattaaaaagttaaaccacaacatattttcagcaacgttt 31287667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 35820032 - 35819974
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||||||||||| ||| ||  |||| ||| |||||| ||||||||||||||||||    
T  35820032 gttttcaacattaaaataaaatttcaaagataaaacacaatatattttcagcaatgttt 35819974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 37375450 - 37375508
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  |||||||||| || | |||||||||||||||| ||||||||    
T  37375450 gtttccaacattaaaatcaagttaaaaattttaaacacaacatattttcaacaatgttt 37375508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 31013014 - 31012966
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttca 190  Q
    |||||||||||||||| || ||||||||||||| |||||| |||||||||    
T  31013014 gttttcaacattaaaacaa-gttaaaaagttaaaacacaatatattttca 31012966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 892352 - 892233
Alignment:
Q  79 aaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaatacac 178  Q
    |||| ||||||||||| ||||||||||| | |||||||||||| ||||||||| |       ||||||||||||||||   ||||| |||||||| ||||    
T  892352 aaaccaatgtggtttgggttggattggttgatgcggttttttc-gagacaatataattttttgttttcaacattaaaatcgagttagaaagttaaaacac 892254  T
Q  179 aacatattttcagcaatgttt 199  Q
    |||||||||  ||||||||||    
T  892253 aacatatttctagcaatgttt 892233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 13859336 - 13859264
Alignment:
Q  146 caacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaattt 218  Q
    ||||| |||||  ||||||||| ||||  ||||||||||||||||||||||||||| |||||| |||||||||    
T  13859336 caacactaaaatcaagttaaaaggttataacacaacatattttcagcaatgtttccgacaatattttaaattt 13859264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 11417192 - 11417250
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||| ||||||| ||| |||||||| ||| |||||||||||||||||||||||||    
T  11417192 gttttcaaaattaaaataaaattaaaaagataaaacacaacatattttcagcaatgttt 11417250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 8064509 - 8064702
Alignment:
Q  34 atgtggtttagtttgtttcgtttgacattcaaaataatat-gaaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataa 132  Q
    ||||||||| ||||| || | ||||| || ||||||| || |||||||||  ||| |||||| |||| || ||| ||||||||||||| | ||| ||||     
T  8064509 atgtggtttggtttggtttgattgacttttaaaataaaatcgaaccaaaccgatgcggtttgggttgaatcggttggtgcggttttttactagataatac 8064608  T
Q  133 annnnnnngttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    |       |||| |||||||||||  ||||||||||| ||| ||||||||| |    ||||||||||||||||||  ||| ||||||||  |||||||    
T  8064609 aattttttgtttccaacattaaaatcaagttaaaaagctaaaacacaacatct----agcaatgtttccaacaatgtttttaatttcatccaacatta 8064702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 20500683 - 20500742
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttc 200  Q
    |||| |||||||||||  ||||||||||  ||| ||||||||||||||||||||||||||    
T  20500683 gtttacaacattaaaatcaagttaaaaatctaaaacacaacatattttcagcaatgtttc 20500742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 7170041 - 7169984
Alignment:
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||| ||||||  || |||||||||||| |||||||||||||| ||||||||||    
T  7170041 ttttcaacgttaaaatcaaattaaaaagttaaaacacaacatatttttagcaatgttt 7169984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 7676305 - 7676216
Alignment:
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||| ||||||||||   |||||||||| ||| | |||||||||||||| |||||||| | | |||| ||| |||||||||| |||||||    
T  7676305 ttttaaacattaaaatcgagttaaaaaggtaaaatacaacatattttcaacaatgttttcgataatatttttaatttcatttcacattac 7676216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 14940599 - 14940542
Alignment:
Q  74 gaaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataa 132  Q
    ||||||||| || | |||||| ||||||||||| ||||||||||||| |||||||||||    
T  14940599 gaaccaaaccaacgcggtttgggttggattggttggtgcggtttttt-cgagacaataa 14940542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 19135063 - 19134997
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaat 207  Q
    ||||||||||||||||   |||||||||| ||| ||||  ||||||| ||||||||||| |||||||    
T  19135063 gttttcaacattaaaatcgagttaaaaaggtaaaacacggcatatttccagcaatgttttcaacaat 19134997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 12108518 - 12108469
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttca 190  Q
    |||| |||||||||||  ||||||||||| ||| ||||||||||||||||    
T  12108518 gtttccaacattaaaattaagttaaaaaggtaaaacacaacatattttca 12108469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 3129520 - 3129440
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcat 221  Q
    ||||||||||||||||   |||||||||  ||| ||| ||||||||||||||||||||||| |||||  ||||||||||||    
T  3129520 gttttcaacattaaaatcgagttaaaaatctaaaacataacatattttcagcaatgtttccgacaatgttttaaatttcat 3129440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 11017134 - 11017192
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||||||||||| ||| ||| |||| ||| |||||||||||||||||||||||||    
T  11017134 gttttcaacattaaaataaaattacaaagataaaacacaacatattttcagcaatgttt 11017192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 37162608 - 37162550
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||||||  || |||||||||||| |||||| ||||||||||||||||||    
T  37162608 gttttcaacattaaaaccaaattaaaaagttaaaacacaatatattttcagcaatgttt 37162550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 12912616 - 12912675
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttc 200  Q
    ||||||||||||||||  |||||||||  |||| ||||||||||||| ||||||||||||    
T  12912616 gttttcaacattaaaatcaagttaaaacattaaaacacaacatatttccagcaatgtttc 12912675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 38926386 - 38926320
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaat 207  Q
    ||||||||||||||||  ||||||||||| ||| ||||||||||||||||  ||| ||| |||||||    
T  38926386 gttttcaacattaaaatcaagttaaaaaggtaaaacacaacatattttcaaaaatatttacaacaat 38926320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 44336916 - 44336983
Alignment:
Q  164 aaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||||| ||| |||||||||||||||| |||||||| | |||||| ||| |||||||||  |||||||    
T  44336916 aaaaaggtaaaacacaacatattttcaacaatgttttcgacaatatttttaatttcattccacattac 44336983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 19539519 - 19539581
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaa 203  Q
    |||| ||||||||| |  ||||||||||||||| |||||||| ||||| | ||||||||||||    
T  19539519 gtttccaacattaatatcaagttaaaaagttaaaacacaacaaattttaaacaatgtttccaa 19539581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 36340706 - 36340648
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||||||||||| ||| ||  |||| ||| |||||| ||||||||||||||||||    
T  36340706 gttttcaacattaaaataaaatttcaaagataaaacacaatatattttcagcaatgttt 36340648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 12193401 - 12193364
Alignment:
Q  162 ttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  12193401 ttaaaaagctaaaacacaacatattttcagcaatgttt 12193364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 12437829 - 12437792
Alignment:
Q  162 ttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  12437829 ttaaaaagctaaaacacaacatattttcagcaatgttt 12437792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 12074144 - 12074064
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcat 221  Q
    |||| |||||||||||  || |||||| |  || |||||||||||||  ||||||||||||||||||  |||| |||||||    
T  12074144 gtttccaacattaaaattaatttaaaatgcaaaaacacaacatatttcgagcaatgtttccaacaatgctttatatttcat 12074064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 18755281 - 18755237
Alignment:
Q  146 caacattaaaagaaagttaaaaagttaatacacaacatattttca 190  Q
    |||||||||||  || |||||||||||| ||||||||||||||||    
T  18755281 caacattaaaaccaaattaaaaagttaaaacacaacatattttca 18755237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 6718734 - 6718805
Alignment:
Q  160 agttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||||||||| ||  |||||| |||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  6718734 agttaaaaagctataacacaatatattttcagcaatgttttcaacaatattttaaatttcatccaacattac 6718805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 12263989 - 12264068
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcat 221  Q
    ||||||||||| |||| |||| ||||||||||| | ||||| ||||||||||||||| |||||||||  || |||||||||    
T  12263989 gttttcaacatcaaaataaagataaaaagttaaaa-acaacttattttcagcaatgtatccaacaatgtttcaaatttcat 12264068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 691513 - 691454
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacata-ttttcagcaatgttt 199  Q
    |||| |||||||||||  ||||||||||||||| |||||||||| |||||||||||||||    
T  691513 gtttccaacattaaaatcaagttaaaaagttaaaacacaacatatttttcagcaatgttt 691454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 27572061 - 27571938
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| |||| |||||| ||||||| ||| ||||||||||||| |||||||||| |       |||| |||||||||||   |||||||||  |||     
T  27572061 aaccaaaccaatgcggtttgggttggatcggttggtgcggtttttt-cgagacaatacaattttttgtttccaacattaaaattgagttaaaaaagtaaa 27571963  T
Q  175 acacaacatattttcagcaatgttt 199  Q
    |||| |||||||| |||||||||||    
T  27571962 acacgacatatttccagcaatgttt 27571938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 6633446 - 6633500
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaat 195  Q
    ||||||||||||||||   |||||||||| ||| |||||||||||||||||||||    
T  6633446 gttttcaacattaaaatccagttaaaaaggtaaaacacaacatattttcagcaat 6633500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 11402721 - 11402779
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  ||||||||||| | | |||||||||||||||||||||||||    
T  11402721 gtttccaacattaaaatcaagttaaaaagctgaaacacaacatattttcagcaatgttt 11402779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 25495213 - 25495271
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||||||  || |||||||| ||| |||||||||||||||| ||||||||    
T  25495213 gttttcaacattaaaatcaaattaaaaaggtaaaacacaacatattttcaacaatgttt 25495271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 33792795 - 33792853
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||| ||||||  || |||||||| ||| |||||||||||||||||||||||||    
T  33792795 gttttcaacgttaaaatcaaattaaaaaggtaaaacacaacatattttcagcaatgttt 33792853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 6894349 - 6894280
Alignment:
Q  162 ttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    |||||||||||| |||||||||||||||||  | |||| |||||||  ||||||||||||  ||||||||    
T  6894349 ttaaaaagttaaaacacaacatattttcagtcacgttttcaacaatgttttaaatttcatccaacattac 6894280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 26007328 - 26007251
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaattt 218  Q
    ||||||||||||||||  ||||||||||| ||  ||||||||||||| || |||||||| | | |||| |||||||||    
T  26007328 gttttcaacattaaaatcaagttaaaaagctataacacaacatatttccaacaatgttttcgataatattttaaattt 26007251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 563857 - 563797
Alignment:
Q  146 caacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaa 206  Q
    ||||||||||| |||||||||||| ||| | ||| |||||||  |||||||||||||||||    
T  563857 caacattaaaataaagttaaaaagctaaaatacatcatatttctagcaatgtttccaacaa 563797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 10090376 - 10090424
Alignment:
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttca 190  Q
    |||||||||||||||  || |||||||| ||||||||||||||||||||    
T  10090376 ttttcaacattaaaattaaattaaaaagctaatacacaacatattttca 10090424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 14652514 - 14652639
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaa-gttaa 173  Q
    |||||||| |||| | |||| ||||||| ||| ||||| ||||||| |||||| ||  |       ||||||||||||||||  |||||||||| | | |    
T  14652514 aaccaaaccaatgcgatttgggttggatcggttggtgcagtttttttcgagacgatgcaattttttgttttcaacattaaaatcaagttaaaaaagctta 14652613  T
Q  174 tacacaacatattttcagcaatgttt 199  Q
     |||||||||||||||||||||||||    
T  14652614 aacacaacatattttcagcaatgttt 14652639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 20191866 - 20191811
Alignment:
Q  175 acacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    ||||||||||||| ||||||||||| |||||||  ||||||||||||  |||||||    
T  20191866 acacaacatatttccagcaatgtttgcaacaatgttttaaatttcatcgaacatta 20191811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 7591515 - 7591458
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||||||||||| || ||||||||||||| | ||||||||||| || ||||||||    
T  7591515 gttttcaacattaaaataa-gttaaaaagttaaaatacaacatatttccaacaatgttt 7591458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 41454996 - 41455054
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  || |||||||| ||| |||||||||||||||| ||||||||    
T  41454996 gtttccaacattaaaatcaaattaaaaagctaaaacacaacatattttcatcaatgttt 41455054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 18845640 - 18845729
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    |||| |||||||||||  |||||||||||  || |||||||||| ||  |||||||||||| |||||  ||| ||||||||  |||||||    
T  18845640 gtttccaacattaaaatcaagttaaaaagccaaaacacaacataattctagcaatgtttccgacaatgtttttaatttcatccaacatta 18845729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 36567843 - 36567892
Alignment:
Q  146 caacattaaaagaaagttaaaaagttaatacacaacatattttcagcaat 195  Q
    |||||||||||  || |||||||| ||| |||||||||||||||||||||    
T  36567843 caacattaaaatcaaattaaaaagctaaaacacaacatattttcagcaat 36567892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 17132034 - 17131978
Alignment:
Q  143 tttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||||||||| ||| ||  |||| ||| |||||| ||||||||||||||||||    
T  17132034 tttcaacattaaaataaaatttcaaagataaaacacaatatattttcagcaatgttt 17131978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 22553493 - 22553569
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatt 217  Q
    ||||||||||||||||  |||| | |||||||| || | |||||||| ||  |||||||| ||||||| ||||||||    
T  22553493 gttttcaacattaaaatcaagtcagaaagttaaaacgcgacatatttccattaatgtttcaaacaatattttaaatt 22553569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 26690008 - 26690048
Alignment:
Q  159 aagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||| ||  |||||||||||||||||||||||||    
T  26690008 aagttaaaaagctataacacaacatattttcagcaatgttt 26690048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 26959740 - 26959780
Alignment:
Q  159 aagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||| ||  |||||||||||||||||||||||||    
T  26959740 aagttaaaaagctataacacaacatattttcagcaatgttt 26959780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 18881981 - 18881911
Alignment:
Q  160 agttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    |||||||||| ||  |||||||||||||  ||||||||||||||||||| ||||||||||||  |||||||    
T  18881981 agttaaaaagctataacacaacatatttctagcaatgtttccaacaatattttaaatttcatccaacatta 18881911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 48602545 - 48602431
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| |||| |||||| ||||||| ||| ||||||||||| || || |||||| |       ||||||||||||||||  |||||||||||||||     
T  48602545 aaccaaaccaatgcggtttgggttggatcggttggtgcggttttatc-gaaacaatacaatttgttgttttcaacattaaaattaagttaaaaagttaaa 48602447  T
Q  175 acacaacatattttca 190  Q
    ||| ||||||||||||    
T  48602446 acaaaacatattttca 48602431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 23120273 - 23120148
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| ||||||||||| ||||||| |||   ||| ||||||| | |||| |||||       |||| |||||||||||  | |||||||||||||     
T  23120273 aaccaaactaatgtggtttgggttggataggttcatgcagtttttttctagacgataaatttttttgtttccaacattaaaatcaggttaaaaagttaaa 23120174  T
Q  175 acacaacata-ttttcagcaatgttt 199  Q
    |||||||||| |||||||||||||||    
T  23120173 acacaacatatttttcagcaatgttt 23120148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 8484795 - 8484854
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacac-aacatattttcagcaatgttt 199  Q
    ||||||||||||||||  || |||||||||||| |||| |||||||||||||||||||||    
T  8484795 gttttcaacattaaaatcaaattaaaaagttaaaacacaaacatattttcagcaatgttt 8484854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 4688803 - 4688869
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaat 207  Q
    |||||||||||||||   ||||||||||| ||| ||||||||||||| || ||||||| ||||||||    
T  4688803 gttttcaacattaaactcaagttaaaaaggtaaaacacaacatatttgcaacaatgttcccaacaat 4688869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 8312015 - 8312073
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||| |||||||||||  ||||||||||| ||| |||||||| ||||||||||||||||    
T  8312015 gtttacaacattaaaatcaagttaaaaagctaaaacacaacaaattttcagcaatgttt 8312073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 40494579 - 40494625
Alignment:
Q  175 acacaacatattttcagcaatgtttccaacaataatttaaatttcat 221  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  40494579 acacaacatattttcagcaaggtttccaaaaatattttaaatttcat 40494625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 42198910 - 42198968
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||||||  | ||||||||||||| |||||||||||||||  ||||||||    
T  42198910 gttttcaacattaaaatcatgttaaaaagttaaaacacaacatattttcgacaatgttt 42198968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 23625858 - 23625801
Alignment:
Q  142 ttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||| ||||||  || |||||||||||| |||||||||||||||| ||||||||    
T  23625858 ttttcaacgttaaaatcaaattaaaaagttaaaacacaacatattttcaacaatgttt 23625801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 15723948 - 15724073
Alignment:
Q  75 aaccaaacaaatgtggtttgtgttggattggtcggtgcggttttttccgagacaataaannnnnnngttttcaacattaaaagaaagttaaaaagttaat 174  Q
    |||||||| |||| |||||| ||||||| ||| | ||||||||||| | |||| |||||       |||| |||||||||||  | |||||| || |||     
T  15723948 aaccaaactaatgcggtttgggttggatcggttgatgcggtttttttcaagacgataaatttttttgtttccaacattaaaatcaggttaaagaggtaaa 15724047  T
Q  175 acacaacata-ttttcagcaatgttt 199  Q
    |||||||||| |||||||||||||||    
T  15724048 acacaacatatttttcagcaatgttt 15724073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 51907194 - 51907274
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcat 221  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||| || || ||||||||  ||||||  |||| |||||||    
T  51907194 gttttcaacattaaaatcaagttaaaaaggtaaaacacaacatacttccaccaatgtttttaacaatgttttatatttcat 51907274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 17845014 - 17845104
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    ||||||||||||||||   |||||||||| ||   ||||||||||||  ||| |||||| | |||||| ||||||||||||  ||||||||    
T  17845014 gttttcaacattaaaattgagttaaaaaggtatagcacaacatatttctagccatgttttcgacaatattttaaatttcatccaacattac 17845104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 21069178 - 21069236
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    ||||||||||||||||  || |||||||| ||| |||| ||||||||||| ||||||||    
T  21069178 gttttcaacattaaaatcaaattaaaaagctaaaacactacatattttcaacaatgttt 21069236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 48338468 - 48338556
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    ||||||||||||||||   |||||||||| ||| |||||||||| ||||||||||| |||| |||||  ||| |||||||||  |||||||    
T  48338468 gttttcaacattaaaatcgagttaaaaaggtaaaacacaacata-tttcagcaatg-ttccgacaatgtttttaatttcattccacattac 48338556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 49640973 - 49641022
Alignment:
Q  146 caacattaaaagaaagttaaaaagttaatacacaacatattttcagcaat 195  Q
    |||||||||||  |||||||| |||||| |||||||||||||||| ||||    
T  49640973 caacattaaaatcaagttaaagagttaaaacacaacatattttcaacaat 49641022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 1290 - 1378
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    |||||||||||||||| || ||||| ||  ||| ||||||||||||| |||||||||||| ||||||  ||||||||||||  |||||||    
T  1290 gttttcaacattaaaataa-gttaataaactaaaacacaacatatttccagcaatgtttcaaacaatgttttaaatttcatcgaacatta 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 7859 - 7947
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacatta 230  Q
    |||||||||||||||| || ||||| ||  ||| ||||||||||||| |||||||||||| ||||||  ||||||||||||  |||||||    
T  7859 gttttcaacattaaaataa-gttaataaactaaaacacaacatatttccagcaatgtttcaaacaatgttttaaatttcatcgaacatta 7947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 25990 - 26078
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgtttccaacaataatttaaatttcatttaacattac 231  Q
    ||||||||||||||||   |||||||||| ||| |||||||||| ||||||||||| |||| |||||  ||| |||||||||  |||||||    
T  25990 gttttcaacattaaaatcgagttaaaaaggtaaaacacaacata-tttcagcaatg-ttccgacaatgtttttaatttcattccacattac 26078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 62536 - 62594
Alignment:
Q  141 gttttcaacattaaaagaaagttaaaaagttaatacacaacatattttcagcaatgttt 199  Q
    |||||||||||||||| ||| ||  |||| ||| |||||| ||||||||||||||||||    
T  62536 gttttcaacattaaaataaaatttcaaagataaaacacaatatattttcagcaatgttt 62594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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