View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18264_low_12 (Length: 246)
Name: NF18264_low_12
Description: NF18264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18264_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 26735168 - 26735386
Alignment:
| Q |
18 |
gcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataataacatatctgggaaaatccctgatgagatt |
117 |
Q |
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| T |
26735168 |
gcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataatagcatatctgggaaaatccctgatgagatt |
26735267 |
T |
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| Q |
118 |
agattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttggtcttcaacgaccggtcat |
217 |
Q |
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| T |
26735268 |
agattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttggtcttcaacgaccggtcat |
26735367 |
T |
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| Q |
218 |
ttgccggaaatcctagcct |
236 |
Q |
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||||||||||||||||||| |
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| T |
26735368 |
ttgccggaaatcctagcct |
26735386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 26726854 - 26727070
Alignment:
| Q |
18 |
gcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataataacatatctgggaaaatccctgatgagatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| |||||| ||| ||||||| |||| ||| |
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| T |
26726854 |
gcttaccggtgaggttcctaaagggatgaagaatctgaaggtgctaaacattttgaatgtttcgcataatagcatatcggggcaaatccccaatgatatt |
26726953 |
T |
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| Q |
118 |
agattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttggtcttcaacgaccggtcat |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
26726954 |
agattcatgatgagtctaacgacgctggatttatcttacaacaatttcaccggaattgtccccaccggtggtcagtttttggtcttcaacgaccgttcat |
26727053 |
T |
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| Q |
218 |
ttgccggaaatcctagc |
234 |
Q |
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|||| ||||| |||||| |
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| T |
26727054 |
ttgcgggaaaccctagc |
26727070 |
T |
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