View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18264_low_4 (Length: 390)
Name: NF18264_low_4
Description: NF18264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18264_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 33185935 - 33185556
Alignment:
| Q |
1 |
tctctctctacattgagctctgtttccaacaatggaagcttcacatgaaagagagagaatcgatcaattcttcaattttttccatcaacaacaacaaccc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33185935 |
tctctctctccattgagctctgtttccaacaatggaagcttcacatgaaagagagagaatcgatcaattcttcaattttttccatcaacaacaacaaccc |
33185836 |
T |
|
| Q |
101 |
accatgtcattctccatcatcgacgcttcaaagaagcgaaaacgatggacgaagattttcccgctacaatcgttcgctgaccctggttgtccaatttcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33185835 |
accatgtcattctccatcatcgacgcttcaaagaagcgaaaacgatggacgaagattttcccgctacaatcgttcgctgaccctggttgtccaatttcac |
33185736 |
T |
|
| Q |
201 |
cttcaggtccgttccgtgaaaacgttcgactctttcttcaagaagctggtgagcttgaagattatacggttatgggaaatcctctttggtgtacttttct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33185735 |
cttcaggtccgttccgtgaaaacgttcgactctttcttcaagaagctggtgagcttgaagattatacggttatgggaaatcctctttggtgcacttttct |
33185636 |
T |
|
| Q |
301 |
gattcatgaaaagaagaatctaatggttcctttctatgctcttgaagaagaagtttataactcttctcatcctttctgtg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33185635 |
gattcatgaaaagaagaatctaatggttcctttctatgctcttgaagaagaagtttataactcttctcatcctttctgtg |
33185556 |
T |
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