View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18264_low_6 (Length: 365)
Name: NF18264_low_6
Description: NF18264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18264_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 30997956 - 30998294
Alignment:
| Q |
18 |
acttattccacatatatacccttacaaccatccctgatcatgcttatgacaaatgttgtacaatataatgctaaacatgtaactgcatacgaaagtcgcc |
117 |
Q |
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| T |
30997956 |
acttattccacatatatacccttagaaccatccctgatcatgcttatgacaaatgttgtacaatataatgctaaacatgtaactgcatacgaaagtcgcc |
30998055 |
T |
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| Q |
118 |
ggataagtctacccgtataatccatggaaaggaatcaattcagtggccgaagttgagtaaattgaaatgatatcttgatcaagatgaagcaccatgtaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30998056 |
ggataagtctacccgtataatccatggaaaggaatcaattcagtggccgaagttgagtaaattgaaatgatatcttgatcaagatgaagcaccatgtaga |
30998155 |
T |
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| Q |
218 |
tggcattacaagaaggggcgataaactataaaaatatgttatatacaaaattgtccctagaggtgtcattggatatctaataagatttttactcggaagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30998156 |
tggcattacaagaaggggcgataaactataaaaatatgttatatacaaaattgtccctagaggtgtcattggatatctaataagatttttactcggaagg |
30998255 |
T |
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| Q |
318 |
ggtgacagcaagatgaaataccgacccacaaattcatct |
356 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
30998256 |
ggtgacagcaagatgaaataccgacccacaagttcatct |
30998294 |
T |
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