View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18264_low_8 (Length: 318)
Name: NF18264_low_8
Description: NF18264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18264_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 3592646 - 3592355
Alignment:
| Q |
18 |
cagggtcacttgtatattattgatgtttctcaagcggttgaccttgaccatccttgcgctcattgtttactgtttgaagactgtaaacatgtatccgtaa |
117 |
Q |
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| T |
3592646 |
cagggtcacttgtatattattgatgtttctcaagcggttgacattgaccatccttgcgctcattgtttactgtttgaagactgtaaacatgtatccgtaa |
3592547 |
T |
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| Q |
118 |
gttctcctaggaattagctgttgattacacatctcttgtcttcttcctcatgtattgcggggttgataaggacaaatgtgtgattaaaagtacttgcttt |
217 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592546 |
gttctcctaggaattggctgttgattacacatctcttgtcttctttctcatgtattgcggggttgataaggacaaatgtgtgattaaaagtacttgcttt |
3592447 |
T |
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| Q |
218 |
cgtgcaggatttctttaagaaacacggtgtaggtgtcatgacaaaaacagagctgtttaagtttattgttaatgcgttcattgctgatgatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3592446 |
cgtgcaggatttctttaagaaacacggtgtaggtgtcatgacaaaaacagagctgtttaagtttatagttaatgcgttcattgctgatgatg |
3592355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 35717019 - 35717310
Alignment:
| Q |
18 |
cagggtcacttgtatattattgatgtttctcaagcggttgaccttgaccatccttgcgctcattgtttactgtttgaagactgtaaacatgtatccgtaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| | ||| ||| ||||||||||| ||||||||||||| |
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| T |
35717019 |
cagggtcacttgtatattattgatgtttctcaagcggttgatcctgaccatcctcatgctcttgattttctgcgtgaagactgtattcatgtatccgtaa |
35717118 |
T |
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| Q |
118 |
gttctcctaggaattagctgttgattacacatctcttgtcttcttcctcatgtattgcggggttgataaggacaaa-tgtgtgattaaaagtacttgctt |
216 |
Q |
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| T |
35717119 |
gtactcctaggcactagctgtaaattacatatctcttgtcctcttcctcatgtgttgtagggctaataagaaaaaagaatgtgatt--aagtacttgttt |
35717216 |
T |
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| Q |
217 |
t-cgtgcaggatttctttaagaaacacggtgtaggtgtcatgacaaaaacagagctgtttaagtttattgttaatgcgttcattgctgatgatg |
309 |
Q |
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| T |
35717217 |
tacttgtaggatttctttaaaaaacatggtgtaggtgtcatgacaataagagaactttttgaatttattgttgatgcatcgatttctgatgatg |
35717310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 28932428 - 28932183
Alignment:
| Q |
18 |
cagggtcacttgtatattattgatgtttctcaagcggttgaccttgaccatccttgcgctcattgtttactgtttgaagactgtaaacatgtatccgtaa |
117 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| | || ||| |||||||||||| || |||||||||| |
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| T |
28932428 |
cagggtcacttatatattattgatgtttctcaaggggttgaccttgaccatcctcttgcttttgagtttctgattgaagactgtattcacgtatccgtaa |
28932329 |
T |
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| Q |
118 |
gttc--tcctaggaattagctgttgattacacatctcttgtcttcttcctcatgtattgcggggttgataaggacaaatgtgtgattaaaagtacttgct |
215 |
Q |
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|||| || ||| | || |||| || ||| |||||||||| |||||||||||| || |||| | ||||| | ||| |||||| ||||||||| | |
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| T |
28932328 |
gttcctcccgaggcactatctgtaaatcacatatctcttgtcatcttcctcatgt-gtggggggctaataagaaaaaaaaagtgattttaagtacttgtt |
28932230 |
T |
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| Q |
216 |
tt-cgtgcaggatttctttaagaaacacggtgtaggtgtcatgacaa |
261 |
Q |
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|| | |||||||||||||||| || || ||||||||||||||||||| |
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| T |
28932229 |
ttacttgcaggatttctttaaaaagcatggtgtaggtgtcatgacaa |
28932183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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