View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18265_high_1 (Length: 374)
Name: NF18265_high_1
Description: NF18265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18265_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 43107895 - 43107545
Alignment:
| Q |
1 |
tgatgaaggatcaacaagttcaaaaattcacaagtgtgaattatgtaacaaaatttttaggtgtggaaaaggattaggtggtcacaaaagaatccatagt |
100 |
Q |
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| T |
43107895 |
tgatgaaggatcaacaagttcaaaaattcacaagtgtgaattatgtaacaaaatttttaggtgtggaaaaggattaggtggtcacaaaagaatccatagt |
43107796 |
T |
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| Q |
101 |
caagccctagggaaagagggtgagtcgaaagcaaaggctaattgcaattctaatgatgtaaaattaagttgtgatgtttgcaaaaagaacttccaatcca |
200 |
Q |
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| T |
43107795 |
caagccctagggaaagagggtgagtcgaaagcagaggctaattgcaattctaatgatgtaaaattaagttgtgatgtttgcaaaaagaacttccaatcca |
43107696 |
T |
|
| Q |
201 |
ataaggctttacatggtcacatgagatctcatcctgaaagggaatggcggggtatgaaccctaataaggataataatattgattatcatgattatgatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43107695 |
ataaggctttacatggtcacatgagatctcatcctgaaagggaatggcggggtatgaaccctaataaggataataatattgattatcatgattatgatca |
43107596 |
T |
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| Q |
301 |
agatcaatattttcttagtgcattcaattccaaggaattggttattgatga |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43107595 |
agatcaatattttcttagtgcattcaattccaaggaattggttattgatga |
43107545 |
T |
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