View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18266_high_12 (Length: 247)
Name: NF18266_high_12
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18266_high_12 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 44146031 - 44145789
Alignment:
| Q |
8 |
cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaag---gtaatggac |
104 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||| | ||||||||||||||||||||||||| ||| | |||||||||||||| |||| ||| |
|
|
| T |
44146031 |
cagagatttgaaggtagacttccattgaagttattgaattggaggcttaagattactaattggtgtaaactatctccaatccatgaagaaggtaacagac |
44145932 |
T |
|
| Q |
105 |
catgaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaac |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44145931 |
catgaaacatattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattatcatttcttaaaat |
44145832 |
T |
|
| Q |
205 |
caaagcctccatgttaacaagggtacccgttgagatgggaatc |
247 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||| |||||| |
|
|
| T |
44145831 |
caaagcctccatgttagaaagggcacccattgagattggaatc |
44145789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 44613764 - 44613533
Alignment:
| Q |
8 |
cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||| || | |||||||||||||||||||||||||| |
|
|
| T |
44613764 |
cagagatttgaaggtaaacttccatagaagttattggatcgaaggcttaagatttctaaattttgtaagctatctccaatccatgaaggtaatggaccat |
44613665 |
T |
|
| Q |
108 |
gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
44613664 |
gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaaagaggaaggaagttgtccactcaaactattatttcttaaaatcaa |
44613565 |
T |
|
| Q |
208 |
agcctccatgttaacaagggtacccgttgaga |
239 |
Q |
| |
|
||||||||| || |||||||||| |||||| |
|
|
| T |
44613564 |
agcctccatatttgtaagggtacccattgaga |
44613533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 44794574 - 44794805
Alignment:
| Q |
8 |
cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||| || | |||||||||||||||||||||||||| |
|
|
| T |
44794574 |
cagagatttgaaggtaaacttccatagaagttattggatcgaaggcttaagatttctaaattttgtaagctatctccaatccatgaaggtaatggaccat |
44794673 |
T |
|
| Q |
108 |
gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44794674 |
gaaacttattttctccaagatccaacaaagccaacttgtttgagaaattcttcaaagaggaaggaagttgtccactcaaactattatttcttaaaaccaa |
44794773 |
T |
|
| Q |
208 |
agcctccatgttaacaagggtacccgttgaga |
239 |
Q |
| |
|
| |||||| || |||||| |||| |||||| |
|
|
| T |
44794774 |
attgtccatgctagcaagggaacccattgaga |
44794805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 17810745 - 17810979
Alignment:
| Q |
13 |
atttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaac |
112 |
Q |
| |
|
||||||||||| ||||||| || ||||| |||||||| |||||||||||||||||||||| | | | ||||| ||||||||||||||||||||||||| |
|
|
| T |
17810745 |
atttgaaggtatacttccacttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccatgaaggtaatggaccatgaaac |
17810844 |
T |
|
| Q |
113 |
ttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagcct |
212 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||| ||||| ||||||||||| |||| |||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
17810845 |
ttattttctccgaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccattatttcttaaaatcaaagcct |
17810944 |
T |
|
| Q |
213 |
ccatgttaacaagggtacccgttgagatgggaatc |
247 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
17810945 |
ccatgttaacaagggcacccattgagaagggaatc |
17810979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 11543515 - 11543739
Alignment:
| Q |
8 |
cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat |
107 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| || ||||||||||||||||| ||| |||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
11543515 |
cagagatttgaaggtatacttccactgaagttattggctcaaaggcttaagattactagttgttgtaaactgcctccaatccatgaaggtaacggaccat |
11543614 |
T |
|
| Q |
108 |
gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaa |
207 |
Q |
| |
|
||||| ||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
11543615 |
gaaacgtattttctccaaggtccaagatagccaacttgtctgagcaattcttcaatgaagaaggaagttgtccactcaaactattatttcttagaaccaa |
11543714 |
T |
|
| Q |
208 |
agcctccatgttaacaagggtaccc |
232 |
Q |
| |
|
| | | |||||||||||||| |||| |
|
|
| T |
11543715 |
atcttgcatgttaacaagggcaccc |
11543739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 35900138 - 35899902
Alignment:
| Q |
8 |
cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat |
107 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| || |||||||||||||||| ||||||||| | ||| | |||||||||| ||||||||||||||| |
|
|
| T |
35900138 |
cagagatttgaaggtagacttccattgaatttattgaaccgaaggcttaagattattaattggtgcaaactatctccaatccataaaggtaatggaccat |
35900039 |
T |
|
| Q |
108 |
gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaa |
207 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||||| | ||||||||||||| ||||| ||| |
|
|
| T |
35900038 |
gaaatatattttctccaagatccaataaagccaa---gtttgagcaattctttaatgaggaaggaagttgtccccccaaattattatttgttaaactcaa |
35899942 |
T |
|
| Q |
208 |
agcctccatgttaacaagggtacccgttgagatgggaatc |
247 |
Q |
| |
|
|||||||| ||| ||||| |||| |||||| ||||||| |
|
|
| T |
35899941 |
agcctccaaattagaaagggcacccattgagaagggaatc |
35899902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 28220 - 28455
Alignment:
| Q |
11 |
agatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaa |
110 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||| |||| |
|
|
| T |
28220 |
agatttgaaggtagacttccattgaagttattgaatcgaaggcttaagattactaattgtcgtaagttgtctccaatccatgaaggtaatggaccttgaa |
28319 |
T |
|
| Q |
111 |
acttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagc |
210 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
28320 |
acatattttctccaagatccaacatagccaacttgtttgagaaattcttcaaagaggaaggaagttggccactcaaactattatttcttaaaaccaaagc |
28419 |
T |
|
| Q |
211 |
ctccatgttaacaagggtacccgttgagatgggaat |
246 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
28420 |
ctccatgttaacaagggcacccattgagatgggaat |
28455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 170572 - 170337
Alignment:
| Q |
11 |
agatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaa |
110 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||| |||| |
|
|
| T |
170572 |
agatttgaaggtagacttccattgaagttattgaatcgaaggcttaagattactaattgtcgtaagttgtctccaatccatgaaggtaatggaccttgaa |
170473 |
T |
|
| Q |
111 |
acttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagc |
210 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
170472 |
acatattttctccaagatccaacatagccaacttgtttgagaaattcttcaaagaggaaggaagttggccactcaaactattatttcttaaaaccaaagc |
170373 |
T |
|
| Q |
211 |
ctccatgttaacaagggtacccgttgagatgggaat |
246 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
170372 |
ctccatgttaacaagggcacccattgagatgggaat |
170337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 181662 - 181423
Alignment:
| Q |
8 |
cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat |
107 |
Q |
| |
|
|||||||||||||| | | |||||| |||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
181662 |
cagagatttgaaggaagaattccattgaagttgttgaatcgaaggcttaagattactaattggtgtaaactttgtccaatccatgcaggtaatggaccat |
181563 |
T |
|
| Q |
108 |
gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
181562 |
gaaacttattttctccaagatccaacagagccaacttgttttagcaattcttcaaacaggaaggaagttgaccactcatactattatttcttaaaaccaa |
181463 |
T |
|
| Q |
208 |
agcctccatgttaacaagggtacccgttgagatgggaatc |
247 |
Q |
| |
|
| ||||||| || |||||||||| |||||| ||||||| |
|
|
| T |
181462 |
aacctccatatttgtaagggtacccattgagaagggaatc |
181423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 26729306 - 26729081
Alignment:
| Q |
13 |
atttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaac |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||||||||||| |||| |||||| ||| ||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26729306 |
atttgaaggtatacttccatagaagttattgaaccgaaggcttaatattattaattgccgtaaactctctccaatccatgcaggtaatggaccatgaaac |
26729207 |
T |
|
| Q |
113 |
ttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagcct |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
26729206 |
atattttctccaaggtccaacaaagccaacttgtttgaacaattcttcaatgaggaagtaagttgtccactcaaactattatttcttaaaatcaaagcct |
26729107 |
T |
|
| Q |
213 |
ccatgttaacaagggtacccgttgag |
238 |
Q |
| |
|
| ||||||||||| | |||| ||||| |
|
|
| T |
26729106 |
ctatgttaacaagagcacccattgag |
26729081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 8343715 - 8343523
Alignment:
| Q |
11 |
agatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaa |
110 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||||||| |||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
8343715 |
agatttgaaggtatacttccattgaagttattgactcgaatgcttaagattactaattgatgtaagttgtctccaatccatgaaggtaatggaccatgaa |
8343616 |
T |
|
| Q |
111 |
acttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaa |
203 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
8343615 |
acttattttctccaatttccaacaaagtcaacttttttgagcaatttttcaaggaggaaggaagttgtccactcaaactattacttcttaaaa |
8343523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 29506644 - 29506837
Alignment:
| Q |
46 |
tcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaacttattttctccaagatccaacaaagccaacttg |
145 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||| |
|
|
| T |
29506644 |
tcgaaggcttaagattattaactggtgtaaactgtctccaatccatgaaggtattggaccatgaaacatattttctccaaggtccaacaaagccaatttg |
29506743 |
T |
|
| Q |
146 |
tttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagcctccatgttaacaagggtacccgttgaga |
239 |
Q |
| |
|
||||| ||||||||||| || ||||||| ||||||||||||| | ||||||||||||| |||||||||||| |||||||| | |||| |||||| |
|
|
| T |
29506744 |
tttgaacaattcttcaaggaggaaggaaattgtccactcaaactgttatttcttaaaatcaaagcctccatattaacaagagcacccattgaga |
29506837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 29227947 - 29228046
Alignment:
| Q |
8 |
cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat |
107 |
Q |
| |
|
||||||||||||| || |||||||| |||| | ||| |||||||||||||||||| | || |||||||| | |||||||||| |||| |||| ||||| |
|
|
| T |
29227947 |
cagagatttgaagctagacttccattgaagctgttagatcgaaggcttaagattagtgatccttgtagactgtctccaatccataaaggcaatgcaccat |
29228046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 29341246 - 29341345
Alignment:
| Q |
8 |
cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat |
107 |
Q |
| |
|
||||||||||||| || |||||||| |||| | ||| |||||||||||||||||| | || |||||||| | |||||||||| |||| |||| ||||| |
|
|
| T |
29341246 |
cagagatttgaagctagacttccattgaagctgttagatcgaaggcttaagattagtgatccttgtagactgtctccaatccataaaggcaatgcaccat |
29341345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 11831910 - 11831955
Alignment:
| Q |
183 |
tcaaattattatttcttaaaaccaaagcctccatgttaacaagggt |
228 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
11831910 |
tcaaactattatttcttaaaaccaaagcttccactttaacaagggt |
11831955 |
T |
|
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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 11930085 - 11930040
Alignment:
| Q |
183 |
tcaaattattatttcttaaaaccaaagcctccatgttaacaagggt |
228 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
11930085 |
tcaaactattatttcttaaaaccaaagcttccaatttaacaagggt |
11930040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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