View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18266_high_15 (Length: 238)
Name: NF18266_high_15
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18266_high_15 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44613479 - 44613260
Alignment:
| Q |
1 |
gttagattattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgcatagaaaag |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44613479 |
gttagattattccaacaatcaggtaactcaccctttatttgattgtttgataaatccaaaatttccaaaatgttagaattacttctgttgcatagaaaa- |
44613381 |
T |
|
| Q |
101 |
aaactaaatctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44613380 |
aaactaaatctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttat |
44613281 |
T |
|
| Q |
201 |
cataggatggttggtaagatt |
221 |
Q |
| |
|
||||| || |||||||||||| |
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|
| T |
44613280 |
catagtattgttggtaagatt |
44613260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 11543800 - 11543990
Alignment:
| Q |
1 |
gttagattattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgcatagaaaag |
100 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| || | | ||||| ||| | || |||||||||| | |
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| T |
11543800 |
gttaaattattccaacaatcaggcagctcaccctttaattgattgtttgatatatccaaaaggcctagagagttaggtttaatattgctgcatagaaagg |
11543899 |
T |
|
| Q |
101 |
aaactaaatctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaact |
191 |
Q |
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| |||||||||||||| ||||||||||| ||| | |||| ||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
11543900 |
acactaaatctgaaaatttattattggagagatgcaatgctactgcttgcaataaaagagaaggaatggaaccttcaagttgatttgaact |
11543990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 17811031 - 17811116
Alignment:
| Q |
7 |
ttattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgca |
92 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
17811031 |
ttattccaacaatcaggcaactcaccctttaattcattgtttgataaatccaaaattcccaaaatgttggtcttacttttgttgca |
17811116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 44794922 - 44795022
Alignment:
| Q |
121 |
ttattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttatcataggatggttggtaagat |
220 |
Q |
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||||||||||||| ||||| | |||||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||| |
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|
| T |
44794922 |
ttattggacagaagtagtgatgctgcttccgataaaaaggaaggaatggaaccttcaaactgatttgaactcaaatctattacaggaattttggtaagat |
44795021 |
T |
|
| Q |
221 |
t |
221 |
Q |
| |
|
| |
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|
| T |
44795022 |
t |
44795022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44794840 - 44794923
Alignment:
| Q |
1 |
gttagattattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattactt |
84 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||| || | |||||| |||||| |
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| T |
44794840 |
gttagattattccaacaatcaggcaactctccctttaattcattgtttgatatatccaaaattcctaacaagttagagttactt |
44794923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 35899851 - 35899798
Alignment:
| Q |
6 |
attattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaa |
59 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||||||||| || ||||| |
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| T |
35899851 |
attattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaa |
35899798 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 28502 - 28717
Alignment:
| Q |
1 |
gttagattattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgcatagaaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || |||||||| || ||||||| | |||||||||||| ||| |||| ||||||||||| | |
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| T |
28502 |
gttagattattccaacaatcaggcaactcgccctttaattcattgtttgctatttccaaaacttccaaaatgttaggcttatttctattgcatagaaagg |
28601 |
T |
|
| Q |
101 |
aaactaaatctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttat |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||| ||| ||| | || ||||||||||||||||||| ||||||||||||| |||||| ||| |
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|
| T |
28602 |
aaactaaatctgaaaatttattattggaaagatatagtgctcttgcctgcgacaagaaagaaggaatggaacctttaaactgatttgaaatcaaatctat |
28701 |
T |
|
| Q |
201 |
cataggatggttggta |
216 |
Q |
| |
|
| ||||| ||||||| |
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| T |
28702 |
aaaaggattgttggta |
28717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 170290 - 170075
Alignment:
| Q |
1 |
gttagattattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgcatagaaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || |||||||| || ||||||| | |||||||||||| ||| |||| ||||||||||| | |
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|
| T |
170290 |
gttagattattccaacaatcaggcaactcgccctttaattcattgtttgctatttccaaaacttccaaaatgttaggcttatttctattgcatagaaagg |
170191 |
T |
|
| Q |
101 |
aaactaaatctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttat |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||| ||| ||| | || ||||||||||||||||||| ||||||||||||| |||||| ||| |
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|
| T |
170190 |
aaactaaatctgaaaatttattattggaaagatatagtgctcttgcctgcgacaagaaagaaggaatggaacctttaaactgatttgaaatcaaatctat |
170091 |
T |
|
| Q |
201 |
cataggatggttggta |
216 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
170090 |
aaaaggattgttggta |
170075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 181369 - 181182
Alignment:
| Q |
9 |
attccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgcatagaaaagaaactaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||||| || | | |||||| || ||||| || ||| ||||| |
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|
| T |
181369 |
attccaacaatcaggcaactcaccctttaattcattgcttgataaatccaaaattaccaaattgcttggcttacttttgctgcatgtgaaggaagctaaa |
181270 |
T |
|
| Q |
109 |
tctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaat |
196 |
Q |
| |
|
|||||||| ||||||| ||| || || ||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
181269 |
tctgaaaatttattatcggaaagttgtactgctcctgcttgcaataaaaataaaggaatgcaaccttcaaattgatttaaactcaaat |
181182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 29506891 - 29507090
Alignment:
| Q |
1 |
gttagattattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgcatagaaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| ||| | |||||| ||||| ||||||||| ||| | |
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|
| T |
29506891 |
gttagattattccaacaatcaggcaactcaccctttaattgattgtttgacaaatccaacattgccagattgttaggcttactattgttgcatacaaagg |
29506990 |
T |
|
| Q |
101 |
aaactaaatctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttat |
200 |
Q |
| |
|
|| ||||||||||||| ||||||||||| ||| ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
29506991 |
aagctaaatctgaaaatttattattggaaagatgcagtgcaactgcttgaaataaaaaggaaggaatggaaccttcaagttgatttgaactcaaatttat |
29507090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 26729021 - 26728831
Alignment:
| Q |
6 |
attattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgcatagaaaagaaact |
105 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||| |||||| || |||||| ||| ||| | |
|
|
| T |
26729021 |
attattccaacaatcaggcaactcgtcctttaattgattgtttgataaatccaacatcgccaaaatgttaggcttacttttgctgcatataaaggaagtt |
26728922 |
T |
|
| Q |
106 |
aaatctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaat |
196 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| || ||||| |||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26728921 |
aaatctgaaaatttattattggagagatgtagtcctagggcttgtcgtaaaaaagaaggaatggaaccttcgagttgatttgaactcaaat |
26728831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8343433 - 8343238
Alignment:
| Q |
1 |
gttagattattccaacaatcaggcaactcaccctttatttgattgtttgataaatccaaaattcccaaaatgttagaattacttctgttgcatagaaaag |
100 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| || ||||||||||| |||||||| ||||||| ||||| || || || ||||||| || | |
|
|
| T |
8343433 |
gttaaattattccaacaatcgggcaactcaccctttaattcattgtttgatacatccaaaagtcccaaatagttaggtctaattttgctgcatagtaagg |
8343334 |
T |
|
| Q |
101 |
aaactaaatctgaaaagttattattggacagaaatagtgctcctgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaat |
196 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| | |||| ||||||||||||||| || |||||||||||||||| | ||||||||||||| |
|
|
| T |
8343333 |
aaactatatctgaaaatttattattggagagatgcaatgctactgcttgcaataaaagtgagggaatggaaccttcaagtttgtttgaactcaaat |
8343238 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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