View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18266_high_18 (Length: 236)
Name: NF18266_high_18
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18266_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 42265268 - 42265053
Alignment:
| Q |
16 |
ataacaaccagagacgaacaaaattaacaagaggcacaagacactcaatcaaagcggatcaaaccatgctcttgataccatgttaaccatctacagtttc |
115 |
Q |
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| T |
42265268 |
ataacaatcagagacgaacaaaattaacaagagacacgagacactgaatcaaagcggatcaaaccatgctc--------atgttaaccatctacggtttc |
42265177 |
T |
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| Q |
116 |
aatataataataaaggagctggctagggtttcataagaatgacaatggcattgcataatattga----atacaagcgaatatcataaccgcagtaaccta |
211 |
Q |
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| T |
42265176 |
aatataataataaaggagccggctagggtttcataagaatgacaatggcattgcataatattgaatatatacaagcaaatatcataaccgcagtaaccta |
42265077 |
T |
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| Q |
212 |
ttatctcaaacttccccttaaactc |
236 |
Q |
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| T |
42265076 |
ttatct-aaacttccccttaaactc |
42265053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 20361781 - 20361732
Alignment:
| Q |
16 |
ataacaaccagagacgaacaaaattaacaagaggcacaagacactcaatc |
65 |
Q |
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| T |
20361781 |
ataacaactagagacaaacaaaattgacaagaggcacaagacactcaatc |
20361732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 102
Target Start/End: Complemental strand, 10740779 - 10740748
Alignment:
| Q |
71 |
ggatcaaaccatgctcttgataccatgttaac |
102 |
Q |
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| T |
10740779 |
ggatcaaaccatgctcttgataccatgttaac |
10740748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 13166635 - 13166603
Alignment:
| Q |
69 |
gcggatcaaaccatgctcttgataccatgttaa |
101 |
Q |
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| T |
13166635 |
gcggatcaaacgatgctcttgataccatgttaa |
13166603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 10414257 - 10414219
Alignment:
| Q |
64 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
102 |
Q |
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| T |
10414257 |
tcaaaacggatcaaaccatgctcttgataccatgttaac |
10414219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 2483701 - 2483666
Alignment:
| Q |
67 |
aagcggatcaaaccatgctcttgataccatgttaac |
102 |
Q |
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| T |
2483701 |
aagcggatcgaaccatgctcttgataccatgttaac |
2483666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 24135130 - 24135092
Alignment:
| Q |
64 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
102 |
Q |
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| T |
24135130 |
tcaaagcggatcaaaccacgctcttgataccatcttaac |
24135092 |
T |
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