View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18266_high_4 (Length: 519)

Name: NF18266_high_4
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18266_high_4
NF18266_high_4
[»] chr5 (9 HSPs)
chr5 (19-509)||(31052397-31052887)
chr5 (19-219)||(31039197-31039397)
chr5 (19-219)||(31048420-31048620)
chr5 (336-505)||(31034059-31034222)
chr5 (19-204)||(31071534-31071719)
chr5 (216-308)||(31039034-31039126)
chr5 (216-308)||(31048257-31048349)
chr5 (369-400)||(31034219-31034250)
chr5 (269-302)||(31071414-31071447)
[»] scaffold0528 (2 HSPs)
scaffold0528 (81-219)||(1-139)
scaffold0528 (216-308)||(210-302)


Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Complemental strand, 31052887 - 31052397
Alignment:
Q  19 gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31052887 gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgattgggaaatgcctgaaggagctaagagggaagacattga 31052788  T
Q  119 cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgtta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31052787 cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgtta 31052688  T
Q  219 tagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtattaactattcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31052687 tagttaagtgagtcttcatattcaatattataataaaagactctaatgtggtattatatgttcaaagaaataaaattcatcttgctgtattaactattcc 31052588  T
Q  319 tttgtagttcaggggagtggtaaataggatgattttgatctgatatgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacatttaggttat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  31052587 tttgtagttcaggggagtggtaaataggatgattttgatctgatatgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacattaaggtttt 31052488  T
Q  419 atcctataaatagtttttcactcagtcgatgaccatgttctacaaatgatgtgttgattttgaatgttatttttcaaagtagttccctttg 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31052487 atcctataaatagtttttcactcagtcgatgaccatgttctacaaatgatgtgttgattttgaatgttatttttcaaagtagttccctttg 31052397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 31039397 - 31039197
Alignment:
Q  19 gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31039397 gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga 31039298  T
Q  119 cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgtta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31039297 cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaacttgcatgtta 31039198  T
Q  219 t 219  Q
    |    
T  31039197 t 31039197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 31048620 - 31048420
Alignment:
Q  19 gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31048620 gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctgttcatttgactgggaaatgcctgaaggagctaagagggaagacattga 31048521  T
Q  119 cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgtta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31048520 cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaacttgcatgtta 31048421  T
Q  219 t 219  Q
    |    
T  31048420 t 31048420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 336 - 505
Target Start/End: Complemental strand, 31034222 - 31034059
Alignment:
Q  336 tggtaaataggatgattttgatctgatatgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacatttaggttatatcctataaatagtttt 435  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||| ||||| ||||||||| ||||||||    
T  31034222 tggtaaataggatgagtttgatctgatatgtcgtgttgtaagaagtctgagagtcgagaaatg---aagaacattaaggttttatcctatacatagtttt 31034126  T
Q  436 tcactcagtcgatgaccatgttctacaaatgatgtgttgattttgaatgttatttttcaaagtagttccc 505  Q
    |||||| || |||||||  ||||||||||||||||||||||||||||||   |||| |||||||||||||    
T  31034125 tcactcggttgatgacctagttctacaaatgatgtgttgattttgaatg---ttttacaaagtagttccc 31034059  T

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Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 31071719 - 31071534
Alignment:
Q  19 gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga 118  Q
    ||||||||||||| ||||||||  | |||||||||||| |||||||||||||||  ||||| |||||||||||||||||||  ||| ||||| | || ||    
T  31071719 gcttaaacatggcaattgctactgtggaccttgtacttgctaatcttctctatttgtttgattgggaaatgcctgaaggagtaaagtgggaaaatataga 31071620  T
Q  119 cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatctt 204  Q
    || | ||||||   | |||||| ||||||||||||||||||||||||| ||| ||||||||||| | |||||||| || |||||||    
T  31071619 cattgatggtcttccaggacttgttcaacacaagaaaaatcctctctgccttattgctaagaagaggattgaatgtgtttgatctt 31071534  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 31039126 - 31039034
Alignment:
Q  216 ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat 308  Q
    ||||||||||||||||||||||  | |||||| |||||||||||||||  || |||||||||||||| |||||||||| ||||||| ||||||    
T  31039126 ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat 31039034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 31048349 - 31048257
Alignment:
Q  216 ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat 308  Q
    ||||||||||||||||||||||  | |||||| |||||||||||||||  || |||||||||||||| |||||||||| ||||||| ||||||    
T  31048349 ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat 31048257  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 31034250 - 31034219
Alignment:
Q  369 tgttgtaagaagtctgagagtcgagaaatggt 400  Q
    ||||||||||||||||||||||||||||||||    
T  31034250 tgttgtaagaagtctgagagtcgagaaatggt 31034219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 31071447 - 31071414
Alignment:
Q  269 gtattatatgttcaaagaaataaaattcatcttg 302  Q
    |||||||||||||||||| |||||||||||||||    
T  31071447 gtattatatgttcaaagatataaaattcatcttg 31071414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 1 - 139
Alignment:
Q  81 tgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaaga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1 tgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaaga 100  T
Q  181 agcgaattgaatgcgtgtgatcttgaaattgcatgttat 219  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  101 agcgaattgaatgcgtgtgatcttgaacttgcatgttat 139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 210 - 302
Alignment:
Q  216 ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat 308  Q
    ||||||||||||||||||||||  | |||||| |||||||||||||||  || |||||||||||||| |||||||||| ||||||| ||||||    
T  210 ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat 302  T

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