View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18266_high_6 (Length: 480)

Name: NF18266_high_6
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18266_high_6
NF18266_high_6
[»] chr7 (11 HSPs)
chr7 (19-480)||(23993034-23993495)
chr7 (100-246)||(15440629-15440775)
chr7 (192-264)||(24001868-24001940)
chr7 (100-246)||(15508326-15508472)
chr7 (192-264)||(24010052-24010124)
chr7 (23-74)||(15508243-15508294)
chr7 (346-407)||(24002034-24002095)
chr7 (204-268)||(24035432-24035496)
chr7 (346-397)||(24010218-24010269)
chr7 (348-434)||(15508583-15508669)
chr7 (353-407)||(26256617-26256671)
[»] chr8 (2 HSPs)
chr8 (340-405)||(11345277-11345342)
chr8 (340-405)||(11338752-11338817)
[»] chr1 (1 HSPs)
chr1 (174-238)||(17954036-17954100)


Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 23993034 - 23993495
Alignment:
Q  19 accctgccaccaaaacaagatctaaaaaattagggttgttatgttatagcacccctcactacacttcttattcatactaccattttaagttcagttttgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23993034 accctgccaccaaaacaagatctaaaaaattagggttgttatgttatagcacccctcactacacttcttattcatactaccattctaagttcagttttgg 23993133  T
Q  119 ttacgatgcttcaacaagaacttataaggttgtagtggttcatgctgaaaagaatgaagcttcgtggaaaagcgaggttgaagtcttcagtctaggtaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993134 ttacgatgcttcaacaagaacttataaggttgtagtggttcatgctgaaaagaatgaagcttcgtggaaaagcgaggttgaagtcttcagtctaggtaat 23993233  T
Q  219 aattgttggagaaatattcagagctttactgcggttcctcttaattggtttaatgttcatattcgacacagtcacctcaacgacggtgtgcattttaatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993234 aattgttggagaaatattcagagctttactgcggttcctcttaattggtttaatgttcatattcgacacagtcacctcaacgacggtgtgcattttaatg 23993333  T
Q  319 gcactattaattggatgacttacaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaagacgtttctgct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993334 gcactattaattggatgacttacaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaagacgtttctgct 23993433  T
Q  419 gccttcagattttaattgggttccatctcttcacattcagcagccagttcttagggttttga 480  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23993434 gccttcagattttaatggggttccatctcttcacattcagcagccagttcttagggttttga 23993495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 246
Target Start/End: Original strand, 15440629 - 15440775
Alignment:
Q  100 attttaagttcagttttggttacgatgcttcaacaagaacttataaggttgtagtggttcatgctgaaaagaatgaagcttcgtggaaaagcgaggttga 199  Q
    ||||||||| ||  |||| ||| ||||||||||||||||||||||||||||||    ||| |  | |||||||  ||||||| |||||||  | |||| |    
T  15440629 attttaagtccacatttgattatgatgcttcaacaagaacttataaggttgtaactattcgtcgtcaaaagaacaaagcttcatggaaaaatgtggttaa 15440728  T
Q  200 agtcttcagtctaggtaataattgttggagaaatattcagagcttta 246  Q
    ||| ||| |||| |||||||||||||||||||||||  |||||||||    
T  15440729 agttttccgtcttggtaataattgttggagaaatatagagagcttta 15440775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 24001868 - 24001940
Alignment:
Q  192 gaggttgaagtcttcagtctaggtaataattgttggagaaatattcagagctttactgcggttcctcttaatt 264  Q
    |||||| |||| |||||||| || | |||||||||||||||||||||||||||| ||| | ||||||||||||    
T  24001868 gaggttaaagttttcagtcttggaagtaattgttggagaaatattcagagctttcctgtgtttcctcttaatt 24001940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 246
Target Start/End: Original strand, 15508326 - 15508472
Alignment:
Q  100 attttaagttcagttttggttacgatgcttcaacaagaacttataaggttgtagtggttcatgctgaaaagaatgaagcttcgtggaaaagcgaggttga 199  Q
    ||||||||| ||  |||||||| |||||||||||||||||||||||||| |||    | | |  | | |||||  ||||||| |||||||  | |||| |    
T  15508326 attttaagtccacatttggttatgatgcttcaacaagaacttataaggtagtaactatccgtcgtcagaagaacaaagcttcatggaaaaatgtggttaa 15508425  T
Q  200 agtcttcagtctaggtaataattgttggagaaatattcagagcttta 246  Q
    ||| |||||||| | |||||||||||||||||||||  |||||||||    
T  15508426 agttttcagtcttgttaataattgttggagaaatatagagagcttta 15508472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 24010052 - 24010124
Alignment:
Q  192 gaggttgaagtcttcagtctaggtaataattgttggagaaatattcagagctttactgcggttcctcttaatt 264  Q
    |||||| |||| |||||||||||  |||||||||||||| ||||||||||||||  || | ||||||||||||    
T  24010052 gaggttaaagttttcagtctaggagataattgttggagagatattcagagctttcttgtgcttcctcttaatt 24010124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 15508243 - 15508294
Alignment:
Q  23 tgccaccaaaacaagatctaaaaaattagggttgttatgttatagcacccct 74  Q
    |||||||| |||||||||||||||||||||| | |||||| |||||||||||    
T  15508243 tgccaccagaacaagatctaaaaaattaggggtattatgtcatagcacccct 15508294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 24002034 - 24002095
Alignment:
Q  346 ctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaag 407  Q
    |||||||||| | ||||||||||  |||| ||||||||||||||||||||||  ||||||||    
T  24002034 ctattattcacgttgagcaatttgtgattgtttcacttgacctttcaacggaatcatacaag 24002095  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 24035432 - 24035496
Alignment:
Q  204 ttcagtctaggtaataattgttggagaaatattcagagctttactgcggttcctcttaattggtt 268  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| ||    ||||||||||||||||    
T  24035432 ttcaatcttggtgataattgttggagaaatattcagagctttcctatatttcctcttaattggtt 24035496  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 24010218 - 24010269
Alignment:
Q  346 ctattattcatgctgagcaatttcagattctttcacttgacctttcaacgga 397  Q
    |||||||||| | ||||||||||  |||| ||||||||||||||||||||||    
T  24010218 ctattattcacgttgagcaatttgcgattgtttcacttgacctttcaacgga 24010269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 15508583 - 15508669
Alignment:
Q  348 attattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaagacgtttctgctgccttcagattttaat 434  Q
    |||| ||||| ||||||||||  |||| || ||||||||||||| || || | |||||||  ||||||||||||||| | |||||||    
T  15508583 attactcatgttgagcaatttatgattgttgcacttgacctttcgacagaaaaatacaagcggtttctgctgccttcgggttttaat 15508669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 26256617 - 26256671
Alignment:
Q  353 tcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaag 407  Q
    ||||| ||||||||||  |||| |||| ||||| |||||||||||||||||||||    
T  26256617 tcatgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag 26256671  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 11345342 - 11345277
Alignment:
Q  340 acaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacataca 405  Q
    |||||||||||| ||||| ||| |||||  ||||| |||| |||||||||||||| ||||||||||    
T  11345342 acaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaactgagacataca 11345277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 11338817 - 11338752
Alignment:
Q  340 acaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacataca 405  Q
    |||||||||||| ||||| ||| |||||  ||||| |||| ||||| |||||||| ||||||||||    
T  11338817 acaagtctattactcatgttgatcaattcaagattgtttcccttgatctttcaactgagacataca 11338752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 17954100 - 17954036
Alignment:
Q  174 gaagcttcgtggaaaagcgaggttgaagtcttcagtctaggtaataattgttggagaaatattca 238  Q
    |||||||| | ||||||||||||| |||| | |||| | ||| ||||||||||||||||||||||    
T  17954100 gaagcttcattgaaaagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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