View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18266_high_7 (Length: 418)
Name: NF18266_high_7
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18266_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 14899900 - 14899494
Alignment:
| Q |
1 |
tgaattacaatcattcaatcgcccaaactaattacaattgcactcaaagtcaaacccagctgatacctttgtaacaacaccaacactgacacggac-cta |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |
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| T |
14899900 |
tgaattacaatcattcaatcgcccaaactaatcacaattgcactcaaagtcaaacccagctgatacctttgtaaca---ccaacacagacacggagacta |
14899804 |
T |
|
| Q |
100 |
ccctgacaatctgacactaacacgtcgacacagg------cgtaaaaagctaacatttgtcggtgctacagagaggctgatacagcctcaatttcgcatg |
193 |
Q |
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| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14899803 |
cactgacaatctgacactaacacttcgacacaggtaaaggcgtaaaaagctaacatttgtcggtgctacagagaggctgatacagcctcaatttcgcatg |
14899704 |
T |
|
| Q |
194 |
aacataacaaatacataacacgtcgactaatctgacactaccacgtcgacacaagtatagctaacatgtgtcggagctacaaagaagctgatacaaccta |
293 |
Q |
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|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
14899703 |
aacataataaatacataacatgtcgactaatctgacactaccacgtcgacacaagtatagctaacatgtgttggagctacaaagaggctgatacaaccta |
14899604 |
T |
|
| Q |
294 |
aatttcgcgtaaacataacaaatacacaatcatagtcaaactcaaatacaactaatgcaacctaaattacacacattttaaggctgcaaaaacatcaaaa |
393 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14899603 |
aatttcgcgtaaacataacaaatacacaattatagtcaaactcaaatacaactaatgcaacctaaattacacacattttaaggctgcaaaaacatcaaaa |
14899504 |
T |
|
| Q |
394 |
gggtaccttt |
403 |
Q |
| |
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|||||||||| |
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|
| T |
14899503 |
gggtaccttt |
14899494 |
T |
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