View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18266_high_9 (Length: 332)

Name: NF18266_high_9
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18266_high_9
NF18266_high_9
[»] chr6 (13 HSPs)
chr6 (19-322)||(31562943-31563246)
chr6 (21-188)||(33262346-33262513)
chr6 (22-185)||(33387877-33388040)
chr6 (33-198)||(33271514-33271670)
chr6 (46-193)||(33285309-33285456)
chr6 (21-177)||(28870290-28870446)
chr6 (46-193)||(33304199-33304346)
chr6 (59-185)||(33644699-33644825)
chr6 (60-198)||(9166471-9166609)
chr6 (51-198)||(33398782-33398929)
chr6 (59-185)||(33057301-33057427)
chr6 (59-203)||(33409683-33409827)
chr6 (137-188)||(33358653-33358704)
[»] scaffold1408 (1 HSPs)
scaffold1408 (33-203)||(349-519)
[»] scaffold0428 (1 HSPs)
scaffold0428 (33-203)||(6095-6265)
[»] chr4 (4 HSPs)
chr4 (46-187)||(31499201-31499342)
chr4 (46-187)||(31472696-31472837)
chr4 (46-187)||(31479154-31479295)
chr4 (51-113)||(31157018-31157080)
[»] chr2 (1 HSPs)
chr2 (46-198)||(17441014-17441160)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 31562943 - 31563246
Alignment:
Q  19 actcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562943 actcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaat 31563042  T
Q  119 agagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctccagattcaatattcacacca 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31563043 agagttctctcctcctatgcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattttccgtggcgcctccagattcaatattcacacca 31563142  T
Q  219 tgggatccaccgtgggtcagaattacgggtataagtaatatcaaattgaaaatcccagtaattatcaatggaagttttcgcacgaccaaatcaagtcacc 318  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31563143 tgggatccaccgtgggtcagaattacgggtataagtgatatcaaattgaaaatccctgtaattatcaatggaagttttcgcacgaccaaatcaagtcacc 31563242  T
Q  319 tatg 322  Q
    ||||    
T  31563243 tatg 31563246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 33262513 - 33262346
Alignment:
Q  21 tcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatag 120  Q
    ||||||||| | ||||||||||||||||| ||||||  |||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||    
T  33262513 tcctaccctacttatttggatgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtag 33262414  T
Q  121 agttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttcc 188  Q
    |     |||||  ||||||||| |||| |||| ||| |||||||||| |||||||||  |||||||||    
T  33262413 accaaactcctattatgcatgataataacaataatatcattggctttctatgttgtgttgtattttcc 33262346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 33388040 - 33387877
Alignment:
Q  22 cctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaataga 121  Q
    |||||||||||||||| |||  | |||| ||||||  | |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  33388040 cctaccctgcctattttgatacgattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaataga 33387941  T
Q  122 gttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 185  Q
        |  |||  |||||||||||||| |||| ||| |||||||||| |||||||||||||||||    
T  33387940 caaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 33387877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 198
Target Start/End: Complemental strand, 33271670 - 33271514
Alignment:
Q  33 tatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctc 132  Q
    |||||| |||||||||||||| |   |||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||| |||||| ||     
T  33271670 tatttgaatgagtttcatattataactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaatagaattctcttctg 33271571  T
Q  133 ctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctc 198  Q
    |||||||||         || ||||||||||||||||||| |||| ||||||||||||||| ||||    
T  33271570 ctatgcatg---------ataataccattggctttgtatgctgtgtagtattttccgtggcacctc 33271514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 33285456 - 33285309
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||||||||||  |||||||||||||||||| | |||||| || ||||| ||| |||||  |||||||||||||||    ||||||  ||||||||||||    
T  33285456 ttcatattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgacaa 33285357  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttccgtggc 193  Q
    || |||| ||| |||||||||||||||||||||||| |||||||||||    
T  33285356 taacaataatatcattggctttgtatgttgtgcagtgttttccgtggc 33285309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 28870290 - 28870446
Alignment:
Q  21 tcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatag 120  Q
    ||||||| || ||||||||||| |||| ||||||||  |||||||||||||||||| | |||||| |||||||| |||||||||| |||||||| |||||    
T  28870290 tcctaccttgtctatttggatgcgtttaatattgttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatag 28870389  T
Q  121 agttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtg 177  Q
    |    ||||||  |||  ||||||||| |||| ||| ||||||||||||||||||||    
T  28870390 acgaatctcctattataaatgacaataacaataatatcattggctttgtatgttgtg 28870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 33304346 - 33304199
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||| ||||||  |||||||| ||||||||| | ||||||||||||| | ||| ||||||||||||||| ||||||    ||||||  ||||||||||||    
T  33304346 ttcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgcatgacaa 33304247  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttccgtggc 193  Q
    || |||| ||| |||||||||| |||||||||| ||||||||| ||||    
T  33304246 taacaattatatcattggctttctatgttgtgcggtattttccatggc 33304199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 33644699 - 33644825
Alignment:
Q  59 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacc 158  Q
    |||||||||||||||||| | ||||||||||||||| ||  ||||| ||||||||| ||||||    ||||||  |||||||||||||| |||| ||| |    
T  33644699 tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc 33644798  T
Q  159 attggctttgtatgttgtgcagtattt 185  Q
    ||||| |||||||||||||||||||||    
T  33644799 attggatttgtatgttgtgcagtattt 33644825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 9166609 - 9166471
Alignment:
Q  60 ccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacca 159  Q
    ||||||| ||||||||| | ||||||||||||||  ||| ||| || ||| |||||||||||  |  |||||  |||||||||||||| |||| ||| ||    
T  9166609 ccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgcatgacaataacaataatatca 9166510  T
Q  160 ttggctttgtatgttgtgcagtattttccgtggcgcctc 198  Q
    ||||||||||||||||||||||||| ||| |||| ||||    
T  9166509 ttggctttgtatgttgtgcagtattctccatggcacctc 9166471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 198
Target Start/End: Complemental strand, 33398929 - 33398782
Alignment:
Q  51 attgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatca 150  Q
    |||||| ||||||||||||||||||| | |||||||||||||||  |  ||||||||||||||| ||||||  | |||||| |||||||||| |||| ||    
T  33398929 attgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataataaca 33398830  T
Q  151 atgata-ccattggctttgtatgttgtgcagtattttccgtggcgcctc 198  Q
    || | | |||||  |||||||||||||||||||||| || ||| |||||    
T  33398829 atcagagccatt-actttgtatgttgtgcagtatttaccatggtgcctc 33398782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 33057427 - 33057301
Alignment:
Q  59 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacc 158  Q
    |||||||||||||||||| | ||||||||||||||| || |||||| |||||||| |||||||    ||||||  || ||||||||||  |||| ||| |    
T  33057427 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatagaccgatctcctattaggcatgacaatgacaataatatc 33057328  T
Q  159 attggctttgtatgttgtgcagtattt 185  Q
    |||||  ||||||||||||||| ||||    
T  33057327 attggtattgtatgttgtgcagcattt 33057301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 33409827 - 33409683
Alignment:
Q  59 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacc 158  Q
    |||||||||||||||||| | ||||||||||||||| ||| |||||| ||||||| |||| ||    ||||||  |||  ||||||||| |||| |||      
T  33409827 tccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaataacaataatatt 33409728  T
Q  159 attggctttgtatgttgtgcagtattttccgtggcgcctccagat 203  Q
    |||||||||||| |||||| | || ||||| |||| |||| ||||    
T  33409727 attggctttgtaagttgtgtattaatttccatggcacctcaagat 33409683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 33358704 - 33358653
Alignment:
Q  137 gcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttcc 188  Q
    ||||||||||| |||| ||  |||||| ||||||||||||||||||||||||    
T  33358704 gcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttcc 33358653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 519 - 349
Alignment:
Q  33 tatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctc 132  Q
    |||||| ||||| |||| ||||||  |||||||||||||||||| |  |||||||||||||| |||||||||| |||||||| ||||||    ||||||     
T  519 tatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctg 420  T
Q  133 ctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctccagat 203  Q
     ||| ||||||||||  ||| ||| |||||||||||||| |||||||||||||| | |||| |||| ||||    
T  419 ttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacctcaagat 349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 6265 - 6095
Alignment:
Q  33 tatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctc 132  Q
    |||||| ||||| |||| ||||||  |||||||||||||||||| |  |||||||||||||| |||||||||| |||||||| ||||||    ||||||     
T  6265 tatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctg 6166  T
Q  133 ctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctccagat 203  Q
     ||| ||||||||||  ||| ||| |||||||||||||| |||||||||||||| | |||| |||| ||||    
T  6165 ttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacctcaagat 6095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 31499201 - 31499342
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||||||||||  |||||||||||||||| | | |||| | || ||||| |||| |||||||||||||| |||||| |  |||||   ||| ||||||||    
T  31499201 ttcatattgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaa 31499300  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttc 187  Q
    || |||| ||| ||||||||||||||||||||||||||||||    
T  31499301 taacaataatatcattggctttgtatgttgtgcagtattttc 31499342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 31472696 - 31472837
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||| ||||||  |||||||||||||||||| | |||| |||||||||| | || ||||||||| |||| | |||| |  |||||   ||||||||||||    
T  31472696 ttcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgacaa 31472795  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttc 187  Q
    || |||| ||| |||||| | | ||||||||| |||||||||    
T  31472796 taacaataatatcattggttgtatatgttgtgtagtattttc 31472837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 31479154 - 31479295
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||| ||||||  |||||| |||||||| || | |||| |||||||||| |||| |||| ||| ||||| |||||| |  |||||   |||||| |||||    
T  31479154 ttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaa 31479253  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttc 187  Q
    || |||| ||| | |||||| ||||||||||| |||||||||    
T  31479254 taacaataatatcgttggctgtgtatgttgtgtagtattttc 31479295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 31157080 - 31157018
Alignment:
Q  51 attgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaata 113  Q
    |||||| |||| |||||||||||||| | |||| |||||||||| |||  |||||||||||||    
T  31157080 attgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaata 31157018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 17441014 - 17441160
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||||||||||  ||||||||| |||||||| | ||||||||||||| | ||| ||||||||||||||  ||||||    ||||||  || |||||||||    
T  17441014 ttcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagcatgacaa 17441113  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctc 198  Q
    ||      ||| |||||| |||||||||||||||||||||||| |||| ||||    
T  17441114 ta------atatcattggttttgtatgttgtgcagtattttccatggcacctc 17441160  T

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