View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18266_low_10 (Length: 332)

Name: NF18266_low_10
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18266_low_10
NF18266_low_10
[»] chr6 (13 HSPs)
chr6 (19-322)||(31562943-31563246)
chr6 (21-188)||(33262346-33262513)
chr6 (22-185)||(33387877-33388040)
chr6 (33-198)||(33271514-33271670)
chr6 (46-193)||(33285309-33285456)
chr6 (21-177)||(28870290-28870446)
chr6 (46-193)||(33304199-33304346)
chr6 (59-185)||(33644699-33644825)
chr6 (60-198)||(9166471-9166609)
chr6 (51-198)||(33398782-33398929)
chr6 (59-185)||(33057301-33057427)
chr6 (59-203)||(33409683-33409827)
chr6 (137-188)||(33358653-33358704)
[»] scaffold1408 (1 HSPs)
scaffold1408 (33-203)||(349-519)
[»] scaffold0428 (1 HSPs)
scaffold0428 (33-203)||(6095-6265)
[»] chr4 (4 HSPs)
chr4 (46-187)||(31499201-31499342)
chr4 (46-187)||(31472696-31472837)
chr4 (46-187)||(31479154-31479295)
chr4 (51-113)||(31157018-31157080)
[»] chr2 (1 HSPs)
chr2 (46-198)||(17441014-17441160)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 31562943 - 31563246
Alignment:
Q  19 actcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562943 actcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaat 31563042  T
Q  119 agagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctccagattcaatattcacacca 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31563043 agagttctctcctcctatgcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattttccgtggcgcctccagattcaatattcacacca 31563142  T
Q  219 tgggatccaccgtgggtcagaattacgggtataagtaatatcaaattgaaaatcccagtaattatcaatggaagttttcgcacgaccaaatcaagtcacc 318  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31563143 tgggatccaccgtgggtcagaattacgggtataagtgatatcaaattgaaaatccctgtaattatcaatggaagttttcgcacgaccaaatcaagtcacc 31563242  T
Q  319 tatg 322  Q
    ||||    
T  31563243 tatg 31563246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 33262513 - 33262346
Alignment:
Q  21 tcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatag 120  Q
    ||||||||| | ||||||||||||||||| ||||||  |||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||    
T  33262513 tcctaccctacttatttggatgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtag 33262414  T
Q  121 agttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttcc 188  Q
    |     |||||  ||||||||| |||| |||| ||| |||||||||| |||||||||  |||||||||    
T  33262413 accaaactcctattatgcatgataataacaataatatcattggctttctatgttgtgttgtattttcc 33262346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 33388040 - 33387877
Alignment:
Q  22 cctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaataga 121  Q
    |||||||||||||||| |||  | |||| ||||||  | |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  33388040 cctaccctgcctattttgatacgattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaataga 33387941  T
Q  122 gttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 185  Q
        |  |||  |||||||||||||| |||| ||| |||||||||| |||||||||||||||||    
T  33387940 caaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 33387877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 198
Target Start/End: Complemental strand, 33271670 - 33271514
Alignment:
Q  33 tatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctc 132  Q
    |||||| |||||||||||||| |   |||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||| |||||| ||     
T  33271670 tatttgaatgagtttcatattataactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaatagaattctcttctg 33271571  T
Q  133 ctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctc 198  Q
    |||||||||         || ||||||||||||||||||| |||| ||||||||||||||| ||||    
T  33271570 ctatgcatg---------ataataccattggctttgtatgctgtgtagtattttccgtggcacctc 33271514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 33285456 - 33285309
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||||||||||  |||||||||||||||||| | |||||| || ||||| ||| |||||  |||||||||||||||    ||||||  ||||||||||||    
T  33285456 ttcatattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgacaa 33285357  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttccgtggc 193  Q
    || |||| ||| |||||||||||||||||||||||| |||||||||||    
T  33285356 taacaataatatcattggctttgtatgttgtgcagtgttttccgtggc 33285309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 28870290 - 28870446
Alignment:
Q  21 tcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatag 120  Q
    ||||||| || ||||||||||| |||| ||||||||  |||||||||||||||||| | |||||| |||||||| |||||||||| |||||||| |||||    
T  28870290 tcctaccttgtctatttggatgcgtttaatattgttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatag 28870389  T
Q  121 agttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtg 177  Q
    |    ||||||  |||  ||||||||| |||| ||| ||||||||||||||||||||    
T  28870390 acgaatctcctattataaatgacaataacaataatatcattggctttgtatgttgtg 28870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 33304346 - 33304199
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||| ||||||  |||||||| ||||||||| | ||||||||||||| | ||| ||||||||||||||| ||||||    ||||||  ||||||||||||    
T  33304346 ttcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgcatgacaa 33304247  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttccgtggc 193  Q
    || |||| ||| |||||||||| |||||||||| ||||||||| ||||    
T  33304246 taacaattatatcattggctttctatgttgtgcggtattttccatggc 33304199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 33644699 - 33644825
Alignment:
Q  59 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacc 158  Q
    |||||||||||||||||| | ||||||||||||||| ||  ||||| ||||||||| ||||||    ||||||  |||||||||||||| |||| ||| |    
T  33644699 tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc 33644798  T
Q  159 attggctttgtatgttgtgcagtattt 185  Q
    ||||| |||||||||||||||||||||    
T  33644799 attggatttgtatgttgtgcagtattt 33644825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 9166609 - 9166471
Alignment:
Q  60 ccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacca 159  Q
    ||||||| ||||||||| | ||||||||||||||  ||| ||| || ||| |||||||||||  |  |||||  |||||||||||||| |||| ||| ||    
T  9166609 ccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgcatgacaataacaataatatca 9166510  T
Q  160 ttggctttgtatgttgtgcagtattttccgtggcgcctc 198  Q
    ||||||||||||||||||||||||| ||| |||| ||||    
T  9166509 ttggctttgtatgttgtgcagtattctccatggcacctc 9166471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 198
Target Start/End: Complemental strand, 33398929 - 33398782
Alignment:
Q  51 attgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatca 150  Q
    |||||| ||||||||||||||||||| | |||||||||||||||  |  ||||||||||||||| ||||||  | |||||| |||||||||| |||| ||    
T  33398929 attgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataataaca 33398830  T
Q  151 atgata-ccattggctttgtatgttgtgcagtattttccgtggcgcctc 198  Q
    || | | |||||  |||||||||||||||||||||| || ||| |||||    
T  33398829 atcagagccatt-actttgtatgttgtgcagtatttaccatggtgcctc 33398782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 33057427 - 33057301
Alignment:
Q  59 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacc 158  Q
    |||||||||||||||||| | ||||||||||||||| || |||||| |||||||| |||||||    ||||||  || ||||||||||  |||| ||| |    
T  33057427 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatagaccgatctcctattaggcatgacaatgacaataatatc 33057328  T
Q  159 attggctttgtatgttgtgcagtattt 185  Q
    |||||  ||||||||||||||| ||||    
T  33057327 attggtattgtatgttgtgcagcattt 33057301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 33409827 - 33409683
Alignment:
Q  59 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacc 158  Q
    |||||||||||||||||| | ||||||||||||||| ||| |||||| ||||||| |||| ||    ||||||  |||  ||||||||| |||| |||      
T  33409827 tccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaataacaataatatt 33409728  T
Q  159 attggctttgtatgttgtgcagtattttccgtggcgcctccagat 203  Q
    |||||||||||| |||||| | || ||||| |||| |||| ||||    
T  33409727 attggctttgtaagttgtgtattaatttccatggcacctcaagat 33409683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 33358704 - 33358653
Alignment:
Q  137 gcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttcc 188  Q
    ||||||||||| |||| ||  |||||| ||||||||||||||||||||||||    
T  33358704 gcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttcc 33358653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 519 - 349
Alignment:
Q  33 tatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctc 132  Q
    |||||| ||||| |||| ||||||  |||||||||||||||||| |  |||||||||||||| |||||||||| |||||||| ||||||    ||||||     
T  519 tatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctg 420  T
Q  133 ctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctccagat 203  Q
     ||| ||||||||||  ||| ||| |||||||||||||| |||||||||||||| | |||| |||| ||||    
T  419 ttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacctcaagat 349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 6265 - 6095
Alignment:
Q  33 tatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctc 132  Q
    |||||| ||||| |||| ||||||  |||||||||||||||||| |  |||||||||||||| |||||||||| |||||||| ||||||    ||||||     
T  6265 tatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctg 6166  T
Q  133 ctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctccagat 203  Q
     ||| ||||||||||  ||| ||| |||||||||||||| |||||||||||||| | |||| |||| ||||    
T  6165 ttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacctcaagat 6095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 31499201 - 31499342
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||||||||||  |||||||||||||||| | | |||| | || ||||| |||| |||||||||||||| |||||| |  |||||   ||| ||||||||    
T  31499201 ttcatattgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaa 31499300  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttc 187  Q
    || |||| ||| ||||||||||||||||||||||||||||||    
T  31499301 taacaataatatcattggctttgtatgttgtgcagtattttc 31499342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 31472696 - 31472837
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||| ||||||  |||||||||||||||||| | |||| |||||||||| | || ||||||||| |||| | |||| |  |||||   ||||||||||||    
T  31472696 ttcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgacaa 31472795  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttc 187  Q
    || |||| ||| |||||| | | ||||||||| |||||||||    
T  31472796 taacaataatatcattggttgtatatgttgtgtagtattttc 31472837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 31479154 - 31479295
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||| ||||||  |||||| |||||||| || | |||| |||||||||| |||| |||| ||| ||||| |||||| |  |||||   |||||| |||||    
T  31479154 ttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaa 31479253  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttc 187  Q
    || |||| ||| | |||||| ||||||||||| |||||||||    
T  31479254 taacaataatatcgttggctgtgtatgttgtgtagtattttc 31479295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 31157080 - 31157018
Alignment:
Q  51 attgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaata 113  Q
    |||||| |||| |||||||||||||| | |||| |||||||||| |||  |||||||||||||    
T  31157080 attgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaata 31157018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 17441014 - 17441160
Alignment:
Q  46 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 145  Q
    |||||||||||  ||||||||| |||||||| | ||||||||||||| | ||| ||||||||||||||  ||||||    ||||||  || |||||||||    
T  17441014 ttcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagcatgacaa 17441113  T
Q  146 tatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctc 198  Q
    ||      ||| |||||| |||||||||||||||||||||||| |||| ||||    
T  17441114 ta------atatcattggttttgtatgttgtgcagtattttccatggcacctc 17441160  T

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