View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18266_low_12 (Length: 249)
Name: NF18266_low_12
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18266_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 42264855 - 42264622
Alignment:
| Q |
1 |
catgaagttttatgactacctatgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatg |
100 |
Q |
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| T |
42264855 |
catgaagttttatgactacctatgtgaaaaggagcacaaaaatcgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatg |
42264756 |
T |
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| Q |
101 |
actaatgctggtttgtttcgagtaagagcaatgcaatgtcacatttttatgaattattaactaacaatcttataacgggtctgattagtttcaaatatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264755 |
actaatgctggtttgtttcgagtaagagcaatgcaatgtcacatttttatgaattattaactaacaatcttataacgggtctgattagtttcaaatatta |
42264656 |
T |
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| Q |
201 |
actaacatattacgagtttatgaattgttacatt |
234 |
Q |
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| T |
42264655 |
actaacatattacgagtttatgaattgttacatt |
42264622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 15966748 - 15966840
Alignment:
| Q |
23 |
tgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatgactaatgctggtttg |
115 |
Q |
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| T |
15966748 |
tgtgataatgagcacaaaaaacgtaagatttttgaggtacctcgtcatatgagagctgaagctctctttaaaatgatgaatgatgctggtttg |
15966840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 12861137 - 12861204
Alignment:
| Q |
33 |
agcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatg |
100 |
Q |
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| T |
12861137 |
agcacaaaaaacgtaagatttttggagtacctcatcatatgagagttgaagctctctttaaaatgatg |
12861204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 16653814 - 16653906
Alignment:
| Q |
23 |
tgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatgactaatgctggtttg |
115 |
Q |
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||||| || |||||||||||||||||| ||||||| ||||||| | ||||||||| ||| ||||| |||||||||||| | ||||||||||| |
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| T |
16653814 |
tgtgataatgagcacaaaaaacgtaagatttttgaggtacctcgtcatatgagagctgaagctctctttaaaatgatgaatgatgctggtttg |
16653906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 17628174 - 17628266
Alignment:
| Q |
23 |
tgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatgactaatgctggtttg |
115 |
Q |
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||||| || |||||||||||||||||| ||||||| ||||||| | ||||||||| ||| ||||| |||||||||||| | ||||||||||| |
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| T |
17628174 |
tgtgataatgagcacaaaaaacgtaagatttttgaggtacctcgtcatatgagagctgaagctctctttaaaatgatgaatgatgctggtttg |
17628266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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