View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18266_low_18 (Length: 237)
Name: NF18266_low_18
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18266_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43394764 - 43394984
Alignment:
| Q |
1 |
ttatgatgcagtgatatcaggagacaaactgattctgaagggattgattttctatggttttcatggagcaagacccgaagaaaggacgctggggcagaag |
100 |
Q |
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| T |
43394764 |
ttatgatgcagtgatatcaggagacaaactgattctgaagggattgattttctatggttttcatggagcaagacccgaagaaaggacgctggggcagaag |
43394863 |
T |
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| Q |
101 |
ttttttgtagatgttgatgcttggatggatctcaaaccagctggaaaatctgataacttgtctcatacttttaattacgttgaaatatatcggtcagtca |
200 |
Q |
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| T |
43394864 |
ttttttgtagatgttgatgcttggatggatctcaaaccagctggaaaatctgataacttgtctcatacttttaattacgttgaaatatatcggtcagtca |
43394963 |
T |
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| Q |
201 |
caacaaattcaccactttatt |
221 |
Q |
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| T |
43394964 |
caacaaattcaccactttatt |
43394984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 43399288 - 43399469
Alignment:
| Q |
20 |
ggagacaaactgattctgaagggattgattttctatggttttcatggagcaagacccgaagaaaggacgctggggcagaagttttttgtagatgttgatg |
119 |
Q |
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| T |
43399288 |
ggagataaactgattcttaagggattaacattctttggttttcatggagcaataaaggaagaaaatacccttggacagaagtttgttgtagatatagatg |
43399387 |
T |
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| Q |
120 |
cttggatggatctcaaaccagctggaaaatctgataacttgtctcatacttttaattacgttgaaatatatcggtcagtcac |
201 |
Q |
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| T |
43399388 |
cttggatggatcttaaaccagctggaatttctgatcatttatctcatactttcagttacgctgaaatatatctgtcagtcac |
43399469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 37410760 - 37410589
Alignment:
| Q |
20 |
ggagacaaactgattctgaagggattgattttctatggttttcatggagcaagacccgaagaaaggacgctggggcagaagttttttgtagatgttgatg |
119 |
Q |
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||||||||||| ||||||| |||||||| ||||||||||||||| ||||||| | | ||||||||||| || || ||||||||| | ||||| || |||| |
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| T |
37410760 |
ggagacaaacttattctgaggggattgactttctatggttttcacggagcaatagcggaagaaaggacactaggacagaagtttgtggtagacgtggatg |
37410661 |
T |
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| Q |
120 |
cttggatggatctcaaaccagctggaaaatctgataacttgtctcatacttttaattacgttgaaatatatc |
191 |
Q |
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| T |
37410660 |
cttggttggatctcaaacctgctggaaaatctgataacttgtctgattcttttagttacgctgaaatatatc |
37410589 |
T |
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