View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18266_low_3 (Length: 555)

Name: NF18266_low_3
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18266_low_3
NF18266_low_3
[»] chr4 (5 HSPs)
chr4 (12-538)||(47041807-47042333)
chr4 (451-529)||(15460314-15460392)
chr4 (451-529)||(15820957-15821035)
chr4 (451-529)||(18112450-18112528)
chr4 (451-529)||(18161979-18162057)
[»] chr7 (1 HSPs)
chr7 (451-529)||(18405905-18405983)
[»] chr5 (2 HSPs)
chr5 (451-529)||(31095633-31095711)
chr5 (451-529)||(20939844-20939922)
[»] scaffold0264 (1 HSPs)
scaffold0264 (451-529)||(5082-5160)
[»] scaffold0001 (1 HSPs)
scaffold0001 (451-529)||(131631-131709)
[»] chr8 (2 HSPs)
chr8 (451-529)||(27008924-27009002)
chr8 (451-528)||(21913381-21913458)
[»] chr6 (2 HSPs)
chr6 (451-529)||(27519892-27519970)
chr6 (454-529)||(14994376-14994451)
[»] chr1 (1 HSPs)
chr1 (451-529)||(28136130-28136208)


Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 12 - 538
Target Start/End: Complemental strand, 47042333 - 47041807
Alignment:
Q  12 cataggaacaaatggatttccacttccttttctctttgttcacagctaaaagcaatcttcaatattcaatctagccaatcttcttctaatcatcaaatgt 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47042333 cataggaacaactggatttccacttccttttctctttgttcacagctaaaagcaatcttcaatattcaatctagccaatcttcttctaatcatcaaatgt 47042234  T
Q  112 gctcataaatccaccaataaaaccagctccattacagcttccacacaaaatatcctttttacccctgaaacaaatatacatacatgttgcaaaggaatta 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47042233 gctcataaatccaccaataaaaccagctccattacagcttccacacaaaatatcctttttacccctgaaacaaatatacatagatgttgcaaaggaatta 47042134  T
Q  212 taattgtaatatagcacatgctaatacatctttcaaccaagaacatagcacagttacacatgctcatacaagataacaatggatggagtgtgttattcaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47042133 taattgtaatatagcacatgctaatacatctttcaaccaagaacatagcacagttacacatgctcatacaagataacaatggatggagtgtgttattcaa 47042034  T
Q  312 tacagttacctgcatagccagcatagtccaccagctttaaatcggccattgaagtgatctatcaaattaactcccgaaccttggcattgtgtacattctt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47042033 tacagttacctgcatagccagcatagtccaccagctttaaatcggccattgaagtgatctatcaaattaactcccgaaccttggcattgtgtacattctt 47041934  T
Q  412 ttgcacctggaattgagcaaaaagttatcagcccagtcgaagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcct 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47041933 ttgcacctggaattgagcaaaaagttatcagcccagtcgaagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcct 47041834  T
Q  512 aaatctttcatggaaaaggcttggata 538  Q
    |||||||||||||||||||||||||||    
T  47041833 aaatctttcatggaaaaggcttggata 47041807  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 15460392 - 15460314
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  15460392 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 15460314  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 15821035 - 15820957
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  15821035 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 15820957  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Original strand, 18112450 - 18112528
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  18112450 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 18112528  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 18162057 - 18161979
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||| | ||||||    
T  18162057 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggcggcttcacctaagtctttcgtagaaaag 18161979  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 18405983 - 18405905
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||| ||||||    
T  18405983 aagcaatctttgtgatctatctctatagatcctgattcctaatatgtaggaagcttcacctaagtctttcatagaaaag 18405905  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 31095711 - 31095633
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| |||||||||||||| ||||||    
T  31095711 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaaatctttcatagaaaag 31095633  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 20939922 - 20939844
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  20939922 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 20939844  T

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Target: scaffold0264 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Original strand, 5082 - 5160
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  5082 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 5160  T

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Target: scaffold0001 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Original strand, 131631 - 131709
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  131631 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 131709  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Original strand, 27008924 - 27009002
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  27008924 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 27009002  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 451 - 528
Target Start/End: Complemental strand, 21913458 - 21913381
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaa 528  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| |||||    
T  21913458 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaa 21913381  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Original strand, 27519892 - 27519970
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  27519892 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 27519970  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 529
Target Start/End: Complemental strand, 14994451 - 14994376
Alignment:
Q  454 caatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    |||||||| ||||||||||||||||||  |||||| |||||| ||||  ||||| ||||| ||||| || ||||||    
T  14994451 caatctttgtgatctatctctatagattttgattcctaatatataggaggcttcacctaagtcttttatagaaaag 14994376  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 529
Target Start/End: Original strand, 28136130 - 28136208
Alignment:
Q  451 aagcaatctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 529  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  28136130 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 28136208  T

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