View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18266_low_4 (Length: 519)
Name: NF18266_low_4
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18266_low_4 |
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| [»] scaffold0528 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Complemental strand, 31052887 - 31052397
Alignment:
| Q |
19 |
gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31052887 |
gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgattgggaaatgcctgaaggagctaagagggaagacattga |
31052788 |
T |
|
| Q |
119 |
cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgtta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052787 |
cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgtta |
31052688 |
T |
|
| Q |
219 |
tagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtattaactattcc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052687 |
tagttaagtgagtcttcatattcaatattataataaaagactctaatgtggtattatatgttcaaagaaataaaattcatcttgctgtattaactattcc |
31052588 |
T |
|
| Q |
319 |
tttgtagttcaggggagtggtaaataggatgattttgatctgatatgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacatttaggttat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
31052587 |
tttgtagttcaggggagtggtaaataggatgattttgatctgatatgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacattaaggtttt |
31052488 |
T |
|
| Q |
419 |
atcctataaatagtttttcactcagtcgatgaccatgttctacaaatgatgtgttgattttgaatgttatttttcaaagtagttccctttg |
509 |
Q |
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| T |
31052487 |
atcctataaatagtttttcactcagtcgatgaccatgttctacaaatgatgtgttgattttgaatgttatttttcaaagtagttccctttg |
31052397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 31039397 - 31039197
Alignment:
| Q |
19 |
gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31039397 |
gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga |
31039298 |
T |
|
| Q |
119 |
cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgtta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31039297 |
cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaacttgcatgtta |
31039198 |
T |
|
| Q |
219 |
t |
219 |
Q |
| |
|
| |
|
|
| T |
31039197 |
t |
31039197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 31048620 - 31048420
Alignment:
| Q |
19 |
gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31048620 |
gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctgttcatttgactgggaaatgcctgaaggagctaagagggaagacattga |
31048521 |
T |
|
| Q |
119 |
cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgtta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31048520 |
cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaacttgcatgtta |
31048421 |
T |
|
| Q |
219 |
t |
219 |
Q |
| |
|
| |
|
|
| T |
31048420 |
t |
31048420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 336 - 505
Target Start/End: Complemental strand, 31034222 - 31034059
Alignment:
| Q |
336 |
tggtaaataggatgattttgatctgatatgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacatttaggttatatcctataaatagtttt |
435 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
31034222 |
tggtaaataggatgagtttgatctgatatgtcgtgttgtaagaagtctgagagtcgagaaatg---aagaacattaaggttttatcctatacatagtttt |
31034126 |
T |
|
| Q |
436 |
tcactcagtcgatgaccatgttctacaaatgatgtgttgattttgaatgttatttttcaaagtagttccc |
505 |
Q |
| |
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|||||| || ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
31034125 |
tcactcggttgatgacctagttctacaaatgatgtgttgattttgaatg---ttttacaaagtagttccc |
31034059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 31071719 - 31071534
Alignment:
| Q |
19 |
gcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagctaagagggaagacattga |
118 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||| ||||| | || || |
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| T |
31071719 |
gcttaaacatggcaattgctactgtggaccttgtacttgctaatcttctctatttgtttgattgggaaatgcctgaaggagtaaagtgggaaaatataga |
31071620 |
T |
|
| Q |
119 |
cactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgatctt |
204 |
Q |
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|| | |||||| | |||||| ||||||||||||||||||||||||| ||| ||||||||||| | |||||||| || ||||||| |
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| T |
31071619 |
cattgatggtcttccaggacttgttcaacacaagaaaaatcctctctgccttattgctaagaagaggattgaatgtgtttgatctt |
31071534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 31039126 - 31039034
Alignment:
| Q |
216 |
ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat |
308 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||||||||||||| || |||||||||||||| |||||||||| ||||||| |||||| |
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| T |
31039126 |
ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat |
31039034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 31048349 - 31048257
Alignment:
| Q |
216 |
ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat |
308 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||||||||||||| || |||||||||||||| |||||||||| ||||||| |||||| |
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| T |
31048349 |
ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat |
31048257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 31034250 - 31034219
Alignment:
| Q |
369 |
tgttgtaagaagtctgagagtcgagaaatggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
31034250 |
tgttgtaagaagtctgagagtcgagaaatggt |
31034219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 31071447 - 31071414
Alignment:
| Q |
269 |
gtattatatgttcaaagaaataaaattcatcttg |
302 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
31071447 |
gtattatatgttcaaagatataaaattcatcttg |
31071414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 1 - 139
Alignment:
| Q |
81 |
tgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaaga |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1 |
tgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaaga |
100 |
T |
|
| Q |
181 |
agcgaattgaatgcgtgtgatcttgaaattgcatgttat |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
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| T |
101 |
agcgaattgaatgcgtgtgatcttgaacttgcatgttat |
139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 210 - 302
Alignment:
| Q |
216 |
ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat |
308 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||||||||||||| || |||||||||||||| |||||||||| ||||||| |||||| |
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| T |
210 |
ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat |
302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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