View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18266_low_5 (Length: 504)

Name: NF18266_low_5
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18266_low_5
NF18266_low_5
[»] chr1 (12 HSPs)
chr1 (17-504)||(47316096-47316584)
chr1 (280-504)||(47319824-47320048)
chr1 (21-215)||(47319610-47319804)
chr1 (75-229)||(47314415-47314569)
chr1 (37-262)||(47306958-47307183)
chr1 (40-229)||(47311036-47311225)
chr1 (383-503)||(47307046-47307166)
chr1 (303-451)||(47319634-47319782)
chr1 (356-449)||(47314438-47314531)
chr1 (48-244)||(47319850-47320046)
chr1 (395-503)||(47311133-47311241)
chr1 (420-486)||(47314699-47314765)
[»] chr3 (4 HSPs)
chr3 (140-229)||(565418-565507)
chr3 (159-223)||(488329-488393)
chr3 (159-219)||(555146-555206)
chr3 (159-223)||(575171-575235)


Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 47316096 - 47316584
Alignment:
Q  17 cttgtaaaggatgtagaagctgtgtttcaagataagagggaaaagtatgaagaattcgtgaaactcctacaagattttggcgccaaaagaattgatagaa 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47316096 cttgtaaaggacgtagaagctgtgtttcaagataagagggaaatgtatgaagaattcgtgaaactcctacaagatttcggcgccaaaagaattgatagaa 47316195  T
Q  117 gagtcgtcaaagaaggagttacggagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttcc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316196 gagtcgtcaaagaaggagttacggagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttcc 47316295  T
Q  217 attggatgatgatttacaacaacgtgatcgatcagcactcgaagatcgagcaatggcgtttttaacagaagttaaggttacatttgaagataagatggaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316296 attggatgatgatttacaacaacgtgatcgatcagcactcgaagatcgagcaatggcgtttttaacagaagttaaggttacatttgaagataagatggaa 47316395  T
Q  317 aagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtttaaagaccata 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316396 aagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtttaaagaccata 47316495  T
Q  417 aaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtgat-gaacaacaaggtgatga 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47316496 aaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtgatagaacaacaaggtgatga 47316584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 280 - 504
Target Start/End: Original strand, 47319824 - 47320048
Alignment:
Q  280 aacagaagttaaggttacatttgaagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagtt 379  Q
    ||||| |||||| ||| |||||  | |||||||||||||||   ||||||||||||||||| ||| ||||||| | ||||||||||||||| | ||||||    
T  47319824 aacagcagttaaagttgcatttccatataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagtt 47319923  T
Q  380 gtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattgg 479  Q
     ||||||||||| |||||||||||||||||||||||||| |||||||||  ||| ||||||| |  ||||||||||||||||||||||||||| ||||||    
T  47319924 ttcaaagaaggactgatggagttgtttaaagaccataaagatttacttttgggactcaacacttggttgccagagggacacaaaatctcacttccattgg 47320023  T
Q  480 atggtgatgaacaacaaggtgatga 504  Q
    |||||||||||||||||||||||||    
T  47320024 atggtgatgaacaacaaggtgatga 47320048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 47319610 - 47319804
Alignment:
Q  21 taaaggatgtagaagctgtgtttcaagataagagggaaaagtatgaagaattcgtgaaactcctacaagattttggcgccaaaagaattgatagaagagt 120  Q
    ||||||||||| ||| |||| |||||||||||| |||||||| ||| || ||| ||||||||||||| |||||  | |||||||||||||||||||||||    
T  47319610 taaaggatgtaaaagttgtgcttcaagataagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagt 47319709  T
Q  121 cgtcaaagaaggagttacggagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttc 215  Q
    | ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  47319710 catcaaagaaggaattatggagttgttgaaagaacatcaagatttaatttcaagattcaacatcttcttgccaccaggagatgaaatcccacttc 47319804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 47314415 - 47314569
Alignment:
Q  75 tgaaactcctacaagattttggcgccaaaagaattgatagaagagtcgtcaaagaaggagttacggagttgttgaaagaacatcaagatttaattttaag 174  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||| |||||||||||||||| |||    
T  47314415 tgaaactcctacatgattttggtgccaaaagaattgataaaagagttgtcaaagaaggagttatggagttgtttaaagagcatcaagatttaatttcaag 47314514  T
Q  175 attcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgat 229  Q
    ||||| ||||||||||| ||||||||||||||| ||| ||||||||||| |||||    
T  47314515 attcagcatcttcttgcaaccaggacatgaaatttcatttccattggataatgat 47314569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 37 - 262
Target Start/End: Original strand, 47306958 - 47307183
Alignment:
Q  37 tgtgtttcaagataagagggaaaagtatgaagaattcgtgaaactcctacaagattttggcgccaaaagaattgatagaagagtcgtcaaagaaggagtt 136  Q
    |||||||||| ||| |||||| |||||||| |||||  ||||| | ||| | |||||    ||| ||||||||||| ||  ||  || ||||||||| |     
T  47306958 tgtgtttcaaaataggagggagaagtatgatgaatttttgaaaattctagatgatttctcggccgaaagaattgatcgagcagctgtgaaagaaggaatg 47307057  T
Q  137 acggagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgatttacaac 236  Q
    ||||||||||| ||||| ||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||    
T  47307058 acggagttgttaaaagatcataaaggtttaatttcaagattcaacatcttcttgccaccaggacaagaaatctcacttccattggatgatgatgaacaac 47307157  T
Q  237 aacgtgatcgatcagcactcgaagat 262  Q
     | ||||| ||| |||| ||||||||    
T  47307158 gaggtgatggattagcattcgaagat 47307183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 47311036 - 47311225
Alignment:
Q  40 gtttcaagataagagggaaaagtatgaagaattcgtgaaactcctacaagattttggcgccaaaagaattgatagaagagtcgtcaaagaaggagttacg 139  Q
    |||||||||||||||||||||||||||||||||  |  ||||  |  |||||||    ||| |||||||||||| |  ||  || |||||| |||||| |    
T  47311036 gtttcaagataagagggaaaagtatgaagaatttttagaacttatgaaagatttcaaggcccaaagaattgatacagaagctgtgaaagaaagagttatg 47311135  T
Q  140 gagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgat 229  Q
    ||||| || |||||||||||| |||| |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  47311136 gagttatttaaagaacatcaatatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcacttccattggatgatgat 47311225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 47307046 - 47307166
Alignment:
Q  383 aaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatg 482  Q
    ||||||||||||| ||||||||| ||||| ||||||  |||| ||||| ||||||||| ||||||||||   |||||  ||||||||||| |||||||||    
T  47307046 aaagaaggaatgacggagttgttaaaagatcataaaggtttaatttcaagattcaacatcttcttgccaccaggacaagaaatctcacttccattggatg 47307145  T
Q  483 gtgatgaacaacaaggtgatg 503  Q
     ||||||||||| ||||||||    
T  47307146 atgatgaacaacgaggtgatg 47307166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 451
Target Start/End: Original strand, 47319634 - 47319782
Alignment:
Q  303 aagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagtt 402  Q
    ||||||||| |||||||||  |||| ||| |||||||||||  ||||| |   |||||||||||||||  ||||||  ||||||||||||| ||||||||    
T  47319634 aagataagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagtt 47319733  T
Q  403 gtttaaagaccataaaaatttactttcaggattcaacaccttcttgcca 451  Q
    ||| ||||| ||| || ||||| ||||| ||||||||| ||||||||||    
T  47319734 gttgaaagaacatcaagatttaatttcaagattcaacatcttcttgcca 47319782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 449
Target Start/End: Original strand, 47314438 - 47314531
Alignment:
Q  356 gccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgc 449  Q
    |||||||||||||||  ||||||||||||||||||| | ||||||||||||||||| ||| || ||||| ||||| |||||| || ||||||||    
T  47314438 gccaaaagaattgataaaagagttgtcaaagaaggagttatggagttgtttaaagagcatcaagatttaatttcaagattcagcatcttcttgc 47314531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 47319850 - 47320046
Alignment:
Q  48 ataagagggaaaagtatgaagaattcgtgaaactcctacaagattttggcgccaaaagaattgatagaagagtcgtcaaagaaggagttacggagttgtt 147  Q
    |||||| |||||||||||| |||||| |||||||| ||   ||||     ||||||||||||||||  |||||  ||||||||||| | | |||||||||    
T  47319850 ataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagttttcaaagaaggactgatggagttgtt 47319949  T
Q  148 gaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgatttacaacaacgtgat 244  Q
     ||||| ||| |||||||| ||||  || ||||||  |  ||||||   |||||  ||||||||||||||||||||| ||||  ||||||| |||||    
T  47319950 taaagaccataaagatttacttttgggactcaacacttggttgccagagggacacaaaatctcacttccattggatggtgatgaacaacaaggtgat 47320046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 503
Target Start/End: Original strand, 47311133 - 47311241
Alignment:
Q  395 atggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtgatgaacaac 494  Q
    |||||||| |||||||| ||| || ||||  ||||| ||||||||| |||| |||||   |||||  ||||||||||| ||||||||| |||| |||||     
T  47311133 atggagttatttaaagaacatcaatatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcacttccattggatgatgatcaacaag 47311232  T
Q  495 aaggtgatg 503  Q
    || ||||||    
T  47311233 aaagtgatg 47311241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 486
Target Start/End: Original strand, 47314699 - 47314765
Alignment:
Q  420 atttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtga 486  Q
    |||||||||  ||| ||||||| |||||||||  |||||||||||||||| || |||||| ||||||    
T  47314699 atttacttttgggactcaacactttcttgccaccgggacacaaaatctcatttccattgggtggtga 47314765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 565507 - 565418
Alignment:
Q  140 gagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgat 229  Q
    |||||||| ||||  ||| ||||||| ||||| |||||||||| |||| ||||| | | | ||||||||  ||||||||||||| |||||    
T  565507 gagttgtttaaaggccatgaagatttgattttgagattcaacaccttcgtgccaactgaatatgaaatcaaacttccattggatcatgat 565418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 488393 - 488329
Alignment:
Q  159 aagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccattggat 223  Q
    ||||||||||||| |||||||||| |||||||||| |   | ||||||||  |||||||||||||    
T  488393 aagatttaattttgagattcaacaccttcttgccagctaaatatgaaatcaaacttccattggat 488329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 555206 - 555146
Alignment:
Q  159 aagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccatt 219  Q
    ||||||||||||  ||||||||||||||||||||| | | | ||||||||  |||||||||    
T  555206 aagatttaatttcgagattcaacatcttcttgccaactgaatatgaaatcaaacttccatt 555146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 575235 - 575171
Alignment:
Q  159 aagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccattggat 223  Q
    ||||||||||||  | ||||||||||||||||||| | | | ||||||||  |||||||||||||    
T  575235 aagatttaatttcgaaattcaacatcttcttgccaactgaatatgaaatcaaacttccattggat 575171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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