View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18266_low_6 (Length: 489)
Name: NF18266_low_6
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18266_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 233 - 489
Target Start/End: Complemental strand, 44515692 - 44515427
Alignment:
| Q |
233 |
tgtcttccactcatttgcataagaaaccacaggtagtccagtatatttgaaggccttttcagtcggaatgccattatctcttatagtacgaagtacttcc |
332 |
Q |
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| T |
44515692 |
tgtcttccactcatttgcataagaaaccacaggtagtccagtatatttgaaggccttttcagtcggaatgccactatctcttatagtacgaagtacttcc |
44515593 |
T |
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| Q |
333 |
tcacaagtaaagccaccaaccacatcctc---------aatgtgtatattaccttcactcgttttacgcattccctccaaccgttgacgtgcaaaacggt |
423 |
Q |
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| T |
44515592 |
tcgcaagtaaagccaccaaccacatcctcaatgcactcaatgtgtatattaccttcactcattttacacattccctccaaccgttgacgtgcaaaacggt |
44515493 |
T |
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| Q |
424 |
ttactgcgtattgtgtagaaagctcaattggatcttcaggcctaagggcgcaattgatcacgcttt |
489 |
Q |
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| T |
44515492 |
ttactacgtattgtgtagaaagctcaattggatcttcaggcctaagggcgcaattgatcacgcttt |
44515427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 44515759 - 44515685
Alignment:
| Q |
19 |
tagacagccctcgaattcagacaccaattaaagacataaattaaaagttatatttaa-ggtttaccttgtcttcc |
92 |
Q |
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| T |
44515759 |
tagacaaccctcggattcagacaccaattaaagacataaattaaaagttatatttaatggtttaccttgtcttcc |
44515685 |
T |
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