View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18266_low_9 (Length: 382)

Name: NF18266_low_9
Description: NF18266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18266_low_9
NF18266_low_9
[»] chr1 (1 HSPs)
chr1 (18-382)||(52124350-52124714)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 52124714 - 52124350
Alignment:
Q  18 cttaggtcatcatgaatctat-gactcgaccagtgtggatttttctcctcctacacttaatcttaagcttcgttttgatgtaatagaatgcaacatcctc 116  Q
    ||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52124714 cttagatcatcatgaatcttttgactcgacaagtgtggatttttctcctcctacacttaatcttaagcttcgttttgatgtaatagaatgcaacatcctc 52124615  T
Q  117 aaacttgttctttagttcttnnnnnnnnngggtcacttttataaagttaactaaattattcannnnnnncttcaaaaagaaaactaattattcaccttct 216  Q
    ||||||||||||||||||||          | ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  52124614 aaacttgttctttagttcttaaaaaaaaaag-tcacttttataaagttaactaaattattcatttttttcttcaaaaagaaaactaattattcaccttct 52124516  T
Q  217 ttaaccgcaaaaagtgatagaatctctaaagtgataaagatgttttttctcacaaaatcattcatatctaatctaaatactccataacatactgcaaatt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52124515 ttaaccgcaaaaagtgatagaatctctaaagtgataaagatgttttttctcacaaaatcattcatatctaatctaaatactccaaaacatactgcaaatt 52124416  T
Q  317 gcttaacttttccattagtaagagaaaggtataatatatggcaatcaaccaagaaattttggatct 382  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52124415 gcttaacttttccattagtaagagaaaagtataatatatggcaatcaaccaagaaattttggatct 52124350  T

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