View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18267_high_3 (Length: 210)
Name: NF18267_high_3
Description: NF18267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18267_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 39479583 - 39479534
Alignment:
| Q |
18 |
aacagcagcaatcattgatattaatgaagtacatacttcctttatgaacc |
67 |
Q |
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| T |
39479583 |
aacagcagcaatcattaatattaatgaagtacatacttcctttatgaacc |
39479534 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 39479497 - 39479465
Alignment:
| Q |
104 |
cgacatgcccacggcagggcaagacaatagaat |
136 |
Q |
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| T |
39479497 |
cgacatgcccacggcagggcaagacaatagaat |
39479465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 225912 - 225945
Alignment:
| Q |
163 |
gtgagaagaagaaggcaaattcaaaggcagcact |
196 |
Q |
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| T |
225912 |
gtgataagaagaaggcaaattcaaaggcagcact |
225945 |
T |
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