View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18268_high_11 (Length: 239)
Name: NF18268_high_11
Description: NF18268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18268_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17855454 - 17855675
Alignment:
| Q |
1 |
taaggcttagtttacattttgatcatcataatcagaaacaggtccacttgttgctttgtctgcgtttaataaaagcattttccttgtcacactaagatgt |
100 |
Q |
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| T |
17855454 |
taaggcttagtttacattttgatcatcataatcagaaacaggtccacttgttgctttgtctgggtttaataaaagcattttccttgtcacactaagatgt |
17855553 |
T |
|
| Q |
101 |
agacatctctgtagttgtgttctggttccagttctagtgtcaataacattatttattactctaagaatatatatcatccataatatagacggcaatgctg |
200 |
Q |
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||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17855554 |
agacatctctgtaattgtgttctggttccagctcttgtgtcaataacattatttattactctaagaatatatatcatccataatatagacggcaatgctg |
17855653 |
T |
|
| Q |
201 |
aaatcctactggaccatcatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
17855654 |
aaatcctactggaccatcatat |
17855675 |
T |
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