View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18268_high_6 (Length: 341)
Name: NF18268_high_6
Description: NF18268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18268_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 2754878 - 2755192
Alignment:
| Q |
1 |
ggttttaaaagagcatggtatgatatgataattagtattttatgacccaaaatcctagttggacaactgtctcaaatgacagttatagacgtatccataa |
100 |
Q |
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| T |
2754878 |
ggttttaaaagagcatggtatgatatgataattaggattttatgacccaaaatcctagttgaacaactgtctcaaatgacagttataaacgtatccataa |
2754977 |
T |
|
| Q |
101 |
tatggtccactcttagattagtgactcaaaaataatctgatccattagtatattgagcttagtcaaattcnnnnnnnttaatatatgaaaatgtttttca |
200 |
Q |
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| T |
2754978 |
tatggtccactcttagattagtgactcaacaataatctgatccattagtatattgagcttagtcaaatccagaaaaattaatatatgaaaa--------- |
2755068 |
T |
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| Q |
201 |
tactttattttaatctgagtttcatattttatatttgtttaataccaatcatcttattacgtaatataatcttgatgttctaaagtcaatttttcattct |
300 |
Q |
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| T |
2755069 |
---tttattttaatctgagtttcatattttatatttgtttaatacccatcatcttattacataatataatcttgatgttctaaagtcaatttttcattct |
2755165 |
T |
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| Q |
301 |
ttttctatgatggaaaaaccaaccttt |
327 |
Q |
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| T |
2755166 |
ttttctatgatggaaaaaccaaccttt |
2755192 |
T |
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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 25570586 - 25570498
Alignment:
| Q |
38 |
ttttatgacccaaaatcctagttggacaactgtctcaaatgacagttatagacgtatccataatatggtccactcttagattagtgact |
126 |
Q |
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| T |
25570586 |
ttttatgacccacaatcctagttggacaactgactcagatggcagttatagacatgtccataatatggtctactcttagattagtgact |
25570498 |
T |
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