View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18268_high_9 (Length: 276)

Name: NF18268_high_9
Description: NF18268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18268_high_9
NF18268_high_9
[»] chr4 (2 HSPs)
chr4 (21-271)||(40825343-40825593)
chr4 (57-150)||(40820711-40820804)
[»] chr7 (11 HSPs)
chr7 (21-271)||(20287545-20287795)
chr7 (21-191)||(20064038-20064208)
chr7 (57-150)||(20293037-20293130)
chr7 (21-150)||(20277974-20278103)
chr7 (29-153)||(20262658-20262782)
chr7 (65-142)||(20090582-20090659)
chr7 (65-150)||(20272230-20272315)
chr7 (29-153)||(20242025-20242149)
chr7 (21-172)||(20282530-20282683)
chr7 (29-150)||(20230078-20230199)
chr7 (57-134)||(20169615-20169692)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 40825343 - 40825593
Alignment:
Q  21 acccacctgtccagttgtgtctattccactcccgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttga 120  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40825343 acccacctgtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttga 40825442  T
Q  121 aaatgccccacatataccataaacgtcacattccgattgttggctactccatataatttgtacatctttcttctcgtaatcccacaattttgctattaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40825443 aaatgccccacatataccataaacgtcacattccgattgttggctactccatataatttgtacatctttcttctcgtaatcccaccattttgctattaaa 40825542  T
Q  221 tggccttgcaaattcagattgtagactaccattgttatatcctttgctact 271  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  40825543 tggccttgcaaattcagattgtagactaccattgttatatcttttggtact 40825593  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 40820711 - 40820804
Alignment:
Q  57 tgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttgaaaatgccccacatataccataaacgtcaca 150  Q
    |||| |||||| |||||||||| ||||| || ||||| ||  |  ||||| |||||||||||| ||||||  |||||||||||||||| |||||    
T  40820711 tgtttctgggtacaaatcctctaaaacagctacatattggcgagctcaataaactacagcttgcaaatgctgcacatataccataaacatcaca 40820804  T

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Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 20287795 - 20287545
Alignment:
Q  21 acccacctgtccagttgtgtctattccactcccgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttga 120  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  20287795 acccaccagtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatattggtaacttcaatgaactacagcttgc 20287696  T
Q  121 aaatgccccacatataccataaacgtcacattccgattgttggctactccatataatttgtacatctttcttctcgtaatcccacaattttgctattaaa 220  Q
     |||||||||||||||||||||| ||||||||||||| |||||||| ||  |||||||||||  ||||||||||| ||||||||| |||||||||||||     
T  20287695 gaatgccccacatataccataaatgtcacattccgatagttggctagtctgtataatttgtaattctttcttctcataatcccaccattttgctattaat 20287596  T
Q  221 tggccttgcaaattcagattgtagactaccattgttatatcctttgctact 271  Q
    ||||||||| ||||||||||||||||||||| || |||||| |||| ||||    
T  20287595 tggccttgcgaattcagattgtagactaccagtgatatatcttttggtact 20287545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 20064038 - 20064208
Alignment:
Q  21 acccacctgtccagttgtgtctattccactcccgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttga 120  Q
    |||||||||||||||||| ||||||||| ||| || || |||| |||||||||||| ||||||| |||||||| |||   |||||||||||||||||||     
T  20064038 acccacctgtccagttgtttctattccattcctgtatgctcctaggttcaaatcctttcaaacagctgcatattggtgtgttcaatgaactacagcttgc 20064137  T
Q  121 aaatgccccacatataccataaacgtcacattccgattgttggctactccatataatttgtacatctttct 191  Q
    ||||||||||||| ||||||| || ||||| || |||| | ||||| ||||| ||| ||| || |||||||    
T  20064138 aaatgccccacatgtaccatatacatcacactctgattttcggctagtccatgtaacttgcacttctttct 20064208  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 20293130 - 20293037
Alignment:
Q  57 tgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttgaaaatgccccacatataccataaacgtcaca 150  Q
    |||| |||||| |||||||||||||||| || ||||| ||| |  |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  20293130 tgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcaca 20293037  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 20278103 - 20277974
Alignment:
Q  21 acccacctgtccagttgtgtctattccactcccgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttga 120  Q
    ||||||| |||||||| |||| |||||| ||  || |||| || |||||||||||||||| |||  | ||||| ||| |   |||||||||||||||||     
T  20278103 acccaccggtccagttatgtccattccattcttgtatgtttctaggttcaaatcctctcagacagatacatattggtgagaacaatgaactacagcttgc 20278004  T
Q  121 aaatgccccacatataccataaacgtcaca 150  Q
    |||||||||||||||||| ||||| |||||    
T  20278003 aaatgccccacatataccgtaaacatcaca 20277974  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 20262782 - 20262658
Alignment:
Q  29 gtccagttgtgtctattccactcccgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttgaaaatgccc 128  Q
    |||||||||| |||| |||| || ||  | || ||||||||||||||| ||||||||||||||| |||| |  |||||||| ||||||||| |||| | |    
T  20262782 gtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctc 20262683  T
Q  129 cacatataccataaacgtcacattc 153  Q
    |||| | ||||||||| ||||||||    
T  20262682 cacagagaccataaacatcacattc 20262658  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 20090582 - 20090659
Alignment:
Q  65 ggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttgaaaatgccccacatataccataa 142  Q
    ||||||||||||||||||||| ||||||||||| | |||||| || ||||  ||| |||||||||||| || ||||||    
T  20090582 ggttcaaatcctctcaaacaaatgcatatcggtgagttcaattaattacacgttgcaaatgccccacaaatgccataa 20090659  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 20272315 - 20272230
Alignment:
Q  65 ggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttgaaaatgccccacatataccataaacgtcaca 150  Q
    |||||||||||| ||| ||| |||||||| ||| |  || ||||||||||| ||| |||||| ||||||||||||||||| |||||    
T  20272315 ggttcaaatcctttcagacagctgcatattggtgaggtcgatgaactacagattgcaaatgcgccacatataccataaacatcaca 20272230  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 20242149 - 20242025
Alignment:
Q  29 gtccagttgtgtctattccactcccgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttgaaaatgccc 128  Q
    |||||||||| |||| |||| || ||  | || ||||||||||||||| ||||||||||||| |  ||| |  |||||||| ||||||||| |||  | |    
T  20242149 gtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactgcaaactggtgagctcaatgaattacagcttgtaaaatctc 20242050  T
Q  129 cacatataccataaacgtcacattc 153  Q
    |||||| ||||||||| ||||||||    
T  20242049 cacatagaccataaacatcacattc 20242025  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 20282683 - 20282530
Alignment:
Q  21 acccacctgtccagttgtgtctattccactcccgtttgttcctgggttcaaatcctctcaaacaac--tgcatatcggtaacttcaatgaactacagctt 118  Q
    ||||||| |||||||| ||| ||||||| ||  || |||| || |||||||||||||||| |||    | ||||| ||| |   ||||||| ||||||||    
T  20282683 acccaccggtccagttatgtatattccattcttgtatgtttctaggttcaaatcctctcagacagagatacatattggtgagaccaatgaattacagctt 20282584  T
Q  119 gaaaatgccccacatataccataaacgtcacattccgattgttggctactccat 172  Q
    | |||||||||||||||||||||| | ||||| || || | |||||| ||||||    
T  20282583 gcaaatgccccacatataccataagcatcacactctgagtcttggcttctccat 20282530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 20230199 - 20230078
Alignment:
Q  29 gtccagttgtgtctattccactcccgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttgaaaatgccc 128  Q
    |||||||||| ||||||||| ||| || |||||   || ||||| ||| ||||||| ||||| || ||     |||||||| ||||||||| ||||||||    
T  20230199 gtccagttgtttctattccattcctgtatgttcaccggatcaaaccctttcaaacagctgcaaattggcgtgctcaatgaattacagcttgtaaatgccc 20230100  T
Q  129 cacatataccataaacgtcaca 150  Q
    |||||| ||||||||| |||||    
T  20230099 cacatagaccataaacatcaca 20230078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 20169615 - 20169692
Alignment:
Q  57 tgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacagcttgaaaatgccccacata 134  Q
    |||| ||||||||||| ||||||||||| || ||| | ||| |  |||||||| |||| |||| ||||||||||||||    
T  20169615 tgtttctgggttcaaaccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaatgccccacata 20169692  T

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