View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18268_low_3 (Length: 596)
Name: NF18268_low_3
Description: NF18268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18268_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 579
Target Start/End: Complemental strand, 36652282 - 36651718
Alignment:
| Q |
15 |
agcataggaagaatgagttaagtcttggttaataccagaaagagggcagtgatagactcattggcccaacgactatcttccagaagatggccaatgatga |
114 |
Q |
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| T |
36652282 |
agcataagaagaatgagttaagtcttggttaataccagaaagagggcagtgatagactcattggcccaacgactatcttccagaagatggccaatgatga |
36652183 |
T |
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| Q |
115 |
tgcaagcgcaaaggagtgcaaagaatacacagagcgcaacaatggtgcttgcggttgcgctgctcagaaatgaagttgaaaaatgaagtggtgagggtaa |
214 |
Q |
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| T |
36652182 |
tgcaagcgcaaaggagtgcgaagaatacacagagcgcaacaatggtgcttgcggttgcgctgctcagaaatgaagttgaaaaatgaagtggtgagggtaa |
36652083 |
T |
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| Q |
215 |
cacaaccatcttgactcactcaagttgagaatgactaactgaatgggtgagttccttttgattctcaatagttattaaataaaaaggaaacgtgtggttt |
314 |
Q |
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| T |
36652082 |
cacaaccatcttgactcactcaagttgagaatgactaactgaatgagtgagttccttttgatcctcaatagttattaaataaaaaggaaatgtgtggttt |
36651983 |
T |
|
| Q |
315 |
ttgaatgacaaatatgtcgggcgttattaacaactttggtttggttggnnnnnnncatatcaactaaaataactactctttcaggcatgtttatgatttg |
414 |
Q |
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| T |
36651982 |
ttgaatgacaaatatgtcgggcgttattaacaactttggtttggttggttttttttatatcaactaaaataactactctttcaggcatgtttatgattta |
36651883 |
T |
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| Q |
415 |
gtacaaatgatatgtcatggaaacatgtattgttgtttcttttatagcagacattgacagatattgttgaccttaagaaccaactactagtcattgtttt |
514 |
Q |
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| T |
36651882 |
gtacaaatgatatgtcatggaaacatgtattgttgtttcttttatagcagacattgacagatattgttgaccttaagaaccaactactagtcattgtttt |
36651783 |
T |
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| Q |
515 |
ttgtgttgaaatattaagagtaaccttcaaatggtataaactaacttggtatttgtatctctttt |
579 |
Q |
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| T |
36651782 |
ttgtgttgaagtattaagagtaaccttcagatggtataaactaacttggtatttgtatctctttt |
36651718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 36647110 - 36646993
Alignment:
| Q |
90 |
tcttccagaagatggccaatgatgatgcaagcgcaaaggagtgcaaagaatacacagagcgcaacaatggtgcttgcggttgcgctgctcagaaatgaag |
189 |
Q |
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| T |
36647110 |
tcttcgagaaggtggccaacgatgatgcaagcgcagaggagtgcgaagaatacacaaagtgaaacaatggtgcttg---------tgctcagatatgaag |
36647020 |
T |
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| Q |
190 |
ttgaaaaatgaagtggtgagggtaaca |
216 |
Q |
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| T |
36647019 |
ttgaagaatcaagtggtgagggtaaca |
36646993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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