View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18268_low_4 (Length: 552)
Name: NF18268_low_4
Description: NF18268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18268_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 14 - 552
Target Start/End: Complemental strand, 14389254 - 14388717
Alignment:
| Q |
14 |
agcaaaggaaaaagagatatctcagttccaatcacttatcataagaagtaaaatatgaaaatgaaaggagaaaataattacaaggtannnnnnnagataa |
113 |
Q |
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| T |
14389254 |
agcaaaggaaaaagagatatctcagttccaatcacttatcataagaagtaaaatatgaaaatgaaaggagaaaataattacaaggtatttttttagataa |
14389155 |
T |
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| Q |
114 |
attgtagggtaagcatcaagaattgtcattattcttgaagcaggttccttacctgatgcattatgtatctttattcttccattacttagctccattcgac |
213 |
Q |
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| T |
14389154 |
attgtagggtaagcatcaagaattgtcattattcttgaagcaggttccttacctgatgcattatgtatctttattcttccat-acttagctccattcggc |
14389056 |
T |
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| Q |
214 |
cagatgctggcgagacatttgcatttactaaccgctcacttgataaatcttgcttattgactccggaaaactcattacgcgtgaatgcaacgatatcctg |
313 |
Q |
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| T |
14389055 |
cagatgctggcgagacattagcatttactaaccgctcactagataaatcttgcttattgactccggaaaactcattacgcgtgaatgcaacgatatcctg |
14388956 |
T |
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| Q |
314 |
attactgccaagagtttcacttttatacacgattgtgttttggcatgtgtgaagtggttgaagagaagcacttggtatcacttttaaatagaaaagaagg |
413 |
Q |
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| T |
14388955 |
attactgccgagagtttcacttttatacacgattgtgttttggcatgtgtgaagtggttgaagagaagcatttggtatcacttttaaatagaaaagaagg |
14388856 |
T |
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| Q |
414 |
aagtacagatgaaaggtgaagcgcttggcctattacaagccatcaaatggattagcaaataaagaaatcaacacaataaagagttagaaccacaatatat |
513 |
Q |
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| T |
14388855 |
aagtacagatgaaaggtgaagcgcttggtctattacaagccatcaaatggattagcaaataaagagatcaacacaataaagagttagaaccacaatatat |
14388756 |
T |
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| Q |
514 |
tttctaacactgtctatcacaataaaccttaaccgtatc |
552 |
Q |
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| T |
14388755 |
tttctaacactgtctatcacaataaaccttaaccgtatc |
14388717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 57 - 303
Target Start/End: Original strand, 16025902 - 16026138
Alignment:
| Q |
57 |
agaagtaaaatatgaaaatgaaaggagaaaataattacaaggtannnnnnnagataaattgtagggtaagcatcaagaattgtcattattcttgaagcag |
156 |
Q |
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| T |
16025902 |
agaagtaacatatgaatatgaaaggagaaaataattacaaggtattcttttagatcaat----gggtaagcatcaagc---gtcttaattcttgaaccaa |
16025994 |
T |
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| Q |
157 |
gttccttacctgatgcattatgtatctttattcttccattacttagctccattcgaccagatgctggcgagacatttgcatttactaaccgctcacttga |
256 |
Q |
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| T |
16025995 |
gttccgtacctgatgtgttatctatctctgttcttccattacttagctccattc---cagatgctggcgagacattagcattctctaaccgctcaccaga |
16026091 |
T |
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| Q |
257 |
taaatcttgcttattgactccggaaaactcattacgcgtgaatgcaa |
303 |
Q |
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| T |
16026092 |
gagatcttgcttattgactcctgatagcttattaggcatgaatgcaa |
16026138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 26204492 - 26204577
Alignment:
| Q |
122 |
gtaagcatcaagaattgtcattattcttgaagcaggttccttacctgatgcattatgtatctttattcttccattacttagctcca |
207 |
Q |
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| T |
26204492 |
gtaagcatcaagtattgtcatcattcttttatcaagttcccaacctgatgcattatttatgtttgttcttccgttactttgctcca |
26204577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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