View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18268_low_5 (Length: 384)
Name: NF18268_low_5
Description: NF18268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18268_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 146 - 366
Target Start/End: Complemental strand, 12128618 - 12128395
Alignment:
| Q |
146 |
ctatgaaacaacgagaaggcactcaagagtattaagccaactcgatcatgggatatgctgcttttaaccaccaaaatgaatagaacataacttttcgcat |
245 |
Q |
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| T |
12128618 |
ctatgaaacaacgagaaggcactcaagaggattaagccaactcgatcatgggatatgctgcttttaaccaccaaaatgaatagaacataacttttcgcat |
12128519 |
T |
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| Q |
246 |
aatatttgtat---attttccaaataatccacacacagctgaaccaaataataagaatatattttcggatgttctgagagaaaccaacaacaaaagtaaa |
342 |
Q |
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| T |
12128518 |
aatatttgtatgttattttccaaataatccacacacagctgaaccaaataataagaatatattttcggatgttctgagagaaaccaacaacaaaagtaaa |
12128419 |
T |
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| Q |
343 |
atatcaaaagtgatatgttaatgt |
366 |
Q |
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| T |
12128418 |
atatcaaaagtgatatgttaatgt |
12128395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 12128705 - 12128645
Alignment:
| Q |
60 |
aaaatggaatatatattaccataacaagaaaaccctttctcaacacacatcacaaggaccg |
120 |
Q |
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| T |
12128705 |
aaaatggaatatatattaccataacaagaaaaccctttctcaacacacatcacaaggaccg |
12128645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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