View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18268_low_9 (Length: 313)
Name: NF18268_low_9
Description: NF18268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18268_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 6291789 - 6292084
Alignment:
| Q |
2 |
agtacattttcaaaatcaaatattgaaggaattgtgacggttgaaaatgaaatattaaaacaattatatgatcaacaacaagcacttcaatgggtgaaca |
101 |
Q |
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| T |
6291789 |
agtacattttcaaaatcaaatattgaagtaattgtgacggttgaaaatgaaatattaaaccaattagatgatccacaacaagcacttcaatgggtgaaca |
6291888 |
T |
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| Q |
102 |
gccgcatcataccgtacctacctaacacaaaaatcaccggaattcaagtaggtaacgaagttttcaccgacgatgatacaactcttcttcaacatcttgt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6291889 |
gccgcatcataccgtacctacctaacacaaaaatcaccggaattcaagtaggtaacgaagttttcaccgacgatgatacaactcttcttcaacatcttgt |
6291988 |
T |
|
| Q |
202 |
tccggcggtgattaatatctacaatgctttagctaaattaggctacgcaaacatttgggtttctacaccaagttctttagcagtgttggaaacttc |
297 |
Q |
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| T |
6291989 |
tccggcggtgattaatatctacaatgctttagctaaattaggctatgcaaacatttgggtttctacaccaagttctttagcagtgttggaaacttc |
6292084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 243
Target Start/End: Complemental strand, 32857000 - 32856799
Alignment:
| Q |
42 |
ttgaaaatgaaatattaaaacaattatatgatcaacaacaagcacttcaatgggtgaacagccgcatcataccgtacctacctaacacaaaaatcaccgg |
141 |
Q |
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|||||||| ||||| |||| |||||| |||||| ||||||||||||||||||||| || | | |||| ||| || || || ||||||| ||||| || |
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| T |
32857000 |
ttgaaaatcaaatactaaaccaattaaatgatccacaacaagcacttcaatgggtaaataccaatatcaaaccatatcttccagacacaaagatcactgg |
32856901 |
T |
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| Q |
142 |
aattcaagtaggtaacgaagttttcaccgacgatgatacaactcttcttcaacatcttgttccggcggtgattaatatctacaatgctttagctaaatta |
241 |
Q |
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|||||||||||| || ||||||||||| || || ||||| || ||||| |||||||||| || ||||| || || ||||||||| ||| | ||||| |
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| T |
32856900 |
aattcaagtagggaatgaagttttcacagaactcgacacaaccctaattcaatatcttgttccagcagtgatcaacatttacaatgctctagttcaatta |
32856801 |
T |
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| Q |
242 |
gg |
243 |
Q |
| |
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|| |
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|
| T |
32856800 |
gg |
32856799 |
T |
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