View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_high_12 (Length: 413)
Name: NF18269_high_12
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_high_12 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 9086911 - 9086516
Alignment:
| Q |
18 |
ggcatgaaatgtagatggaacaccaacagctccaaacgtgacattgaatgttttaaacgcaaaagaatacagaaaactatctatattccaagctctctta |
117 |
Q |
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| T |
9086911 |
ggcatgaaatgtagatggaacaccaacagctccaaacgtgacattgaatgttttaaccgcaaaagaatacggaaaactatctatattccaaactctctta |
9086812 |
T |
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| Q |
118 |
tttttgctagtaccggtaagatgagacgaaattaagaaactaatttttgtttcttaatgttctgtttatctctttttgttgggaagaaaattctaacttt |
217 |
Q |
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| T |
9086811 |
tttttgctagtaccggtaagatgagacgaaactaagaaactactttttgtttcttaatgttctgtttatctgtttttgttgggaagaaaattctaacttt |
9086712 |
T |
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| Q |
218 |
taatatgatattgcaggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaa |
317 |
Q |
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| T |
9086711 |
taatatgatattgcagggtcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaagaagatcaagttagaa |
9086612 |
T |
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| Q |
318 |
ttgataagtttttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaaaagaatcacaggtgggtttaaggagaaacttg |
413 |
Q |
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| T |
9086611 |
ttgataagtttttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaaaacaatcacaggtgggtttaaggagaaacttg |
9086516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 226 - 405
Target Start/End: Complemental strand, 9125872 - 9125693
Alignment:
| Q |
226 |
tattgcaggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataag |
325 |
Q |
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| T |
9125872 |
tattgcaggttcaattttattggggttgctcaccattgcatttataaagatttatctacatttcagagaaaaagaagaagatcaagttagagttgatagg |
9125773 |
T |
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| Q |
326 |
tttttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaaaagaatcacaggtgggtttaagga |
405 |
Q |
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| T |
9125772 |
tttttagaggattatagagcacaaaagcctgccagattttcatattctgatataaaaagaatcactagtgggtttaagga |
9125693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 405
Target Start/End: Complemental strand, 9070401 - 9070225
Alignment:
| Q |
229 |
tgcaggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataagttt |
328 |
Q |
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| T |
9070401 |
tgcaggttcaattatattgggaatgggcaccattgtatttattaagatttatctgcatttcagagaaaaagaagaagatcaagttagaattgataagttt |
9070302 |
T |
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| Q |
329 |
ttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaaaagaatcacaggtgggtttaagga |
405 |
Q |
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| T |
9070301 |
ttagaggattatagagcccaaaagcctgccagattttcatactctgatataaaaaggatcacgagtggatttaagga |
9070225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 411
Target Start/End: Complemental strand, 8979689 - 8979509
Alignment:
| Q |
231 |
caggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataagttttt |
330 |
Q |
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| T |
8979689 |
caggttcaattgttttggggttggttaccattatatttattaagatctatttatattttagaaaaaaagaagaagatcaagttagagttgacaagttttt |
8979590 |
T |
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| Q |
331 |
agatgattttagagcacaaaagcctgctagattttcctatgctgatataaaaagaatcacaggtgggtttaaggagaaact |
411 |
Q |
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| T |
8979589 |
agaggattatagagcacaacaacctactagattttcttttgctgatataaaaagaatcacaaatgggtttaaggaaaaact |
8979509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 8862215 - 8862133
Alignment:
| Q |
305 |
gatcaagttagaattgataagtttttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaaaagaat |
387 |
Q |
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| T |
8862215 |
gatcaaattagagttgataagtttttagaggattatcgagcacaaaaacctactagattttcttatgccgatataaaaagaat |
8862133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 9126057 - 9126005
Alignment:
| Q |
18 |
ggcatgaaatgtagatggaacaccaacagctccaaacgtgacattgaatgttt |
70 |
Q |
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| T |
9126057 |
ggcatgaaatgtagatggaataacaacggcaccaaatgtgacattgaatgttt |
9126005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 8866090 - 8866030
Alignment:
| Q |
305 |
gatcaagttagaattgataagtttttagatgattttagagcacaaaagcctgctagatttt |
365 |
Q |
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| T |
8866090 |
gatcaaattagagttgataagtttttagaggattatcgagctcaaaaacctactagatttt |
8866030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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