View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18269_high_14 (Length: 315)

Name: NF18269_high_14
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18269_high_14
NF18269_high_14
[»] chr4 (1 HSPs)
chr4 (16-307)||(23584254-23584544)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 23584254 - 23584544
Alignment:
Q  16 caattctcatagtgaattctaacagattagtgacccatgtgaatgagctgctaaagacttcaaggtnnnnnnnntcacaattctcttgccgagcatacaa 115  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||        ||||||||||||||||||||||||||    
T  23584254 caattctcatagtgaattctgacagattagtgactcatgtgaatgagctgctaaagatttcaaggtaaaaaaa-tcacaattctcttgccgagcatacaa 23584352  T
Q  116 ttcgtctagcaaaatgtcactttcaaaaaactaaataaagaggaatcggtcacattgacattgtttgtcattctatcactttggaaaaggagagaaacac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23584353 ttcgtctagcaaaatgtcactttcaaaaaactaaataaagaggaatcagtcacattgacattgtttgtcattctatcactttggaaaaggagagaaacgc 23584452  T
Q  216 aaggataatagaggagcaagtctacaagcaaggcagagcattacaacttgaagaataaagtgttgacgcaacatcctatctcgtttcatctc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23584453 aaggataatagaggagcaagtctacaagcaaggcagagcattacaacttgaagaataaagtgttgacgcaacatcctctctcgtttcatctc 23584544  T

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