View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18269_high_5 (Length: 533)
Name: NF18269_high_5
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Complemental strand, 26543392 - 26542888
Alignment:
| Q |
13 |
ttctgatcaataaagaaaacaaggcagcaatatgcatcaacagccatgcatatataaaggaactcatctaccagttaatagcctcttccatggcatacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26543392 |
ttctgatcaataaagaaaacaaggcagcaatatgcatcaacagccatgcatatataaaggaactcatctaccagttaatagcctcttccatggcatacat |
26543293 |
T |
|
| Q |
113 |
gtactgttatccttaaaaacatgcaattatagaataaatcacttttgaagtacagaatgtgagaggagaaaatttcacataatttatagactgtaatttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26543292 |
gtactgttatccttaaaaacatgcaattatagaataaatcacttttgaagtacagaatgtgagaggagaaaatttcacataatttatagactgtaatttc |
26543193 |
T |
|
| Q |
213 |
taaattttccattacatttcagaaacttgtgcatgatgcttgaaaactcaaattcaatcttttaaagtctagtatccattcgccatctaaaatttcttta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26543192 |
taaattttccattacatttcagaaacttgtgcatgatgcttgaaaactcaaattcaatcttttaaagtctagtatccattcgccatctaaaatttcttta |
26543093 |
T |
|
| Q |
313 |
acttgattgactgcaatcaaatcgcttgtacaagccggtgtaatttacctcgaacatataagtaaacaaaaagagagatcaaaagcaaacatggttacag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26543092 |
acttgattgactgcaatcaaatcgcttgtacaagccggtgtaatttacctcgaacatataagtaaacaaaaagagagatcaaaagcaaacatggttacag |
26542993 |
T |
|
| Q |
413 |
agatatggtatgaagaatatactaaggttaaagcagatatgttttattcattattgtacagcagtagagaccctcctgctatggcgacgacaaagaggtg |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26542992 |
agatatggtatgaagaatatactaaggttaaagcagatatgttttattcattattgtagagcagtagagaccctcctgctatggcgacgacaaagaggtg |
26542893 |
T |
|
| Q |
513 |
ctctt |
517 |
Q |
| |
|
||||| |
|
|
| T |
26542892 |
ctctt |
26542888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 26537643 - 26537581
Alignment:
| Q |
145 |
aataaatcacttttgaagtacagaatgtgagaggagaaaatttcacataatttatagactgta |
207 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| | ||||||||||| |||||||||||||| |
|
|
| T |
26537643 |
aataaatcacttttgaagcacagattggcagaggcggaaatttcacattatttatagactgta |
26537581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University