View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_high_8 (Length: 499)
Name: NF18269_high_8
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 125 - 484
Target Start/End: Complemental strand, 19696761 - 19696412
Alignment:
| Q |
125 |
tatctttcacgtggttctctctcttaatgagttggttaagggtatttcagtaaaaaacactattttaaaaaggcaacattttggagctcaaggttatttc |
224 |
Q |
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| T |
19696761 |
tatctttcacgtggttctctctcttaatgagttggttaagggtatttcagtaaaaaacactattttaaaaaggcagcattttggagctcaaggttatttt |
19696662 |
T |
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| Q |
225 |
agtaaaaatacttagggttttttctagggtttgttagctgacctgtattccnnnnnnnnctaggagttttgaaggatacagttgtttattatacaagttg |
324 |
Q |
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| T |
19696661 |
agtaaaaaaacttagggttttttctagggtttgttagcagacctgtattccttttttt-ctaggatttttgaaggatacagttgtttattat-------- |
19696571 |
T |
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| Q |
325 |
ctcatgagaaccaaacacaaacaacactatactgattcagaaaaatttaatcacctgaggttggaattgtttaaaccttgctatcaaaaatatgatggaa |
424 |
Q |
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| T |
19696570 |
-tcatgagaaccaaacacaaacaacactatactgattcagaaaaatttaatcacctgaggttggaattgtttaaaccttgctatcaaaaatatgatggaa |
19696472 |
T |
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| Q |
425 |
gttgtgattattgctgctgctgctacacttgggaatttacttaatggatgggaaagttct |
484 |
Q |
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| T |
19696471 |
gttgtgattattgctgctgctgctacacttgggaatttacttaatggatgggaaagttct |
19696412 |
T |
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